Water Quality Issues in the 113th Congress:
An Overview

Claudia Copeland
Specialist in Resources and Environmental Policy
April 2, 2013
Congressional Research Service
7-5700
www.crs.gov
R42883
CRS Report for Congress
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epared for Members and Committees of Congress

Water Quality Issues in the 113th Congress: An Overview

Summary
Much progress has been made in achieving the ambitious goals that Congress established 40
years ago in the Clean Water Act (CWA) to restore and maintain the chemical, physical, and
biological integrity of the nation’s waters. However, long-standing problems persist, and new
problems have emerged. Water quality problems are diverse, ranging from pollution runoff from
farms and ranches, city streets, and other diffuse or “nonpoint” sources, to toxic substances
discharged from factories and sewage treatment plants.
There is little agreement among stakeholders about what solutions are needed and whether new
legislation is required to address the nation’s remaining water pollution problems. For some time,
efforts to comprehensively amend the CWA have stalled as interests have debated whether and
exactly how to change the law. Congress has instead focused legislative attention on enacting
narrow bills to extend or modify selected CWA programs, but not any comprehensive proposals.
For several years, the most prominent legislative water quality issue has concerned financial aid
for municipal wastewater treatment projects. House and Senate committees have approved bills to
reauthorize CWA assistance on several occasions since the 107th Congress, but, for various
reasons, no legislation other than appropriations has been enacted. At issue has been the role of
the federal government in assisting states and cities in meeting needs to rebuild, repair, and
upgrade wastewater treatment plants, especially in light of capital costs that are projected to be
nearly $300 billion over the next 20 years.
Programs that regulate activities in wetlands also have been of interest, especially CWA Section
404, which has been criticized by landowners for intruding on private land-use decisions and
imposing excessive economic burdens. Environmentalists view this regulatory program as
essential for maintaining the health of wetland ecosystems, and they are concerned about court
rulings that have narrowed regulatory protection of wetlands and about related administrative
actions. Many stakeholders desire clarification of the act’s regulatory jurisdiction, but they differ
on what solutions are appropriate.
A number of other CWA issues have been the subject of congressional oversight and legislation,
with some legislators highly critical of recent regulatory initiatives and others more supportive of
EPA’s actions. Some issues have drawn policymakers’ attention following court rulings that
addressed and in several cases expanded the regulatory scope of water quality protection efforts
under the law. Among the topics of interest are environmental and economic impacts of
Chesapeake Bay restoration efforts, federal promulgation of water quality standards in Florida,
regulation of surface coal mining activities in Appalachia, and other CWA regulatory actions.
Congressional interest in several of these issues has been reflected in specific legislative
proposals and debate over policy provisions of legislation to provide appropriations for EPA. In
the 112th Congress, Members from both parties raised questions about the cost-effectiveness of
some of EPA’s actions and/or whether the agency has exceeded its authority. Similar attention to
these issues is anticipated in the 113th Congress.

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Water Quality Issues in the 113th Congress: An Overview

Contents
Introduction ...................................................................................................................................... 1
Legislative and Oversight Issues ..................................................................................................... 2
Authorization of Clean Water Infrastructure Funding ............................................................... 3
Legislative Responses ......................................................................................................... 6
Regulatory Protection of Wetlands ............................................................................................ 8
Judicial Proceedings Involving Section 404 ....................................................................... 8
Other Clean Water Act Issues .................................................................................................. 11
Chesapeake Bay Restoration ............................................................................................. 12
Florida Nutrient Water Quality Standards ......................................................................... 13
Mountaintop Mining in Appalachia .................................................................................. 15
The Relationship Between CWA and FIFRA .................................................................... 17
CWA Permits for Logging Road Discharges ..................................................................... 18
Continuing Issue: Appropriations .................................................................................................. 19
FY2013 Appropriations ........................................................................................................... 19

Tables
Table 1. CWA Wastewater Treatment Funding ................................................................................ 5

Contacts
Author Contact Information........................................................................................................... 20

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Water Quality Issues in the 113th Congress: An Overview

Introduction
Much progress has been made in achieving the ambitious goals that Congress established 40
years ago to restore and maintain the chemical, physical, and biological integrity of the nation’s
waters. However, long-standing problems persist, and new problems have emerged. Water quality
problems are diverse, ranging from pollution runoff from farms and ranches, city streets, and
other diffuse or “nonpoint” sources, to “point” source discharges of metals and organic and
inorganic toxic substances from factories and sewage treatment plants.
The principal law that deals with polluting activity in the nation’s streams, lakes, estuaries, and
coastal waters is the Federal Water Pollution Control Act (P.L. 92-500, enacted in 1972),
commonly known as the Clean Water Act, or CWA. It consists of two major parts: regulatory
provisions that impose progressively more stringent requirements on industries and cities to abate
pollution and meet the statutory goal of zero discharge of pollutants; and provisions that authorize
federal financial assistance for municipal wastewater treatment plant construction. Both parts are
supported by research activities, plus permit and enforcement provisions. Programs at the federal
level are administered by the Environmental Protection Agency (EPA); state and local
governments have primary day-to-day responsibilities to implement CWA programs through
standard-setting, permitting, enforcement, and administering financial assistance programs.1
The water quality restoration objective declared in the 1972 act was accompanied by statutory
goals to eliminate the discharge of pollutants into navigable waters by 1985 and to attain,
wherever possible, waters deemed “fishable and swimmable” by 1983. Although those goals have
not been fully achieved, considerable progress has been made, especially in controlling
conventional pollutants (suspended solids, bacteria, and oxygen-consuming materials) discharged
by industries and sewage treatment plants.
Progress has been mixed in controlling discharges of toxic pollutants (heavy metals, inorganic
and organic chemicals), which are more numerous and can harm human health and the
environment even when present in very small amounts—at the parts-per-billion level. Moreover,
efforts to control pollution from diffuse sources, termed nonpoint source pollution (rainfall runoff
from urban, suburban, and agricultural areas, for example), are more recent, given the earlier
emphasis on “point source” pollution (discharges from industrial facilities and municipal
wastewater treatment plants). Overall, data reported by EPA and states indicate that 44% of river
and stream miles assessed by states and 64% of assessed lake acres do not meet applicable water
quality standards and are impaired for one or more desired uses.2 In 2006 EPA issued an
assessment of streams and small rivers and reported that 67% of U.S. stream miles are in poor or
fair condition and that nutrients and streambed sediments have the largest adverse impact on the
aquatic species in these waters.3 Approximately 95,000 lakes and 544,000 river miles in the
United States are under fish-consumption advisories (including 100% of the Great Lakes and
their connecting waters), due to chemical contaminants in lakes, rivers, and coastal waters, and
one-third of shellfishing beds are closed or restricted, due to toxic pollutant contamination.

1 For further information, see CRS Report RL30030, Clean Water Act: A Summary of the Law, by Claudia Copeland.
2 U.S. Environmental Protection Agency, National Water Quality Inventory: Report to Congress, 2004 Reporting
Cycle
, EPA 841-R-08-001, January 2009, http://water.epa.gov/lawsregs/guidance/cwa/305b/2004report_index.cfm.
3 U.S. Environmental Protection Agency, Wadeable Streams Assessment: A Collaborative Survey of the Nation’s
Streams
, EPA 841-B-06-002, December 2006, http://www.epa.gov/owow/streamsurvey/.
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Mercury is a contaminant of growing concern—as of 2003, 45 states had issued partial or
statewide fish or shellfish consumption advisories because of elevated mercury levels.
The last major amendments to the CWA were the Water Quality Act of 1987 (P.L. 100-4). That
legislation culminated six years of congressional efforts to extend and revise the act and were the
most comprehensive amendments since 1972. Authorizations of appropriations for some
programs provided in P.L. 100-4, such as general grant assistance to states, research, and general
EPA support, expired in FY1990 and FY1991. Authorizations for wastewater treatment funding
expired in FY1994. None of these programs has lapsed, however, as Congress has continued to
appropriate funds to implement them. EPA, states, industry, and other citizens continue to
implement the 1987 legislation, including meeting the numerous requirements and deadlines in it.
The Clean Water Act has been viewed as one of the most successful environmental laws in terms
of achieving its statutory goals, which have been widely supported by the public. Lately,
however, some have questioned whether additional actions to achieve further benefits are worth
the costs, especially in view of the continuing problems of the U.S. economy. Criticism has come
from industry, which has been the long-standing focus of the act’s regulatory programs and often
opposes imposition of new stringent and costly requirements. Criticism also has come from
developers and property rights groups who contend that federal regulations (particularly the act’s
wetlands permit program) are a costly intrusion on private land-use decisions. States and cities
have traditionally supported water quality programs and federal funding to assist them in carrying
out the law, but many have opposed CWA measures that they fear might impose new unfunded
mandates. Many environmental groups believe that further fine-tuning and strengthening of the
law is needed to maintain progress achieved to date and to address remaining water quality
problems.
Legislative and Oversight Issues
October 2012 marked the 40th anniversary of passage of the Clean Water Act and 25 years since
the last major amendments to the law were enacted. While, as noted, there has been measurable
clean water progress as a result of the act, observers and analysts agree that significant water
pollution problems remain. However, there is less agreement about what solutions are needed and
whether new legislation is required. Several key water quality issues exist: what additional
actions should be taken to implement existing provisions of the law, whether additional steps are
necessary to achieve overall goals of the act that have not yet been attained, how to ensure that
progress made to date is not lost through diminished attention to water quality needs, and what is
the appropriate federal role in guiding and paying for clean water infrastructure and other
activities. For some time, efforts to comprehensively amend the act have stalled as interests have
debated whether and exactly how to change the law. Many issues that might be addressed involve
making difficult tradeoffs between impacts on different sectors of the economy; taking action
when there is technical or scientific uncertainty; and allocating governmental responsibilities
among federal, state, local, and tribal entities for implementing the law.
These factors partly explain why Congress has recently focused legislative attention on narrow
bills to extend or modify selected CWA programs, rather than taking up comprehensive proposals.
Other factors also have been at work. These include a general reluctance by some Members of
Congress to address controversial environmental issues in view of the relatively slim majorities
held by political parties in the House and the Senate; a lack of legislative initiatives by the
Administration on clean water issues (neither the Clinton nor the Bush Administration proposed
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CWA legislation, nor has the Obama Administration); and the high economic cost of addressing
water infrastructure issues.
Two CWA issues that have been the focus of much of legislators’ interest in recent Congresses
received some attention again in the 112th Congress—water infrastructure financing, and
regulatory protection of wetlands—but with different focus than in the recent past. After the 2010
election, congressional leadership and priorities shifted—particularly in the House, which used
both oversight and legislation to focus criticism on EPA regulatory activities. The 112th Congress
enacted two bills that amend the CWA. One extended the moratorium for CWA permitting of
certain vessels for an additional year, until December 18, 2014 (P.L. 112-213), and the other
extends authorization of funds for the Lake Pontchartrain Basin program in Section 121 of the act
through FY2017 (P.L. 112-237). With the 113th Congress divided like the 112th into a Republican-
controlled House and a Democratic-controlled Senate, and President Obama having been re-
elected, consideration of environmental issues generally, including water quality, may reflect
those of the previous two years.
Authorization of Clean Water Infrastructure Funding
Meeting the nation’s needs to build, upgrade, rebuild, and repair wastewater infrastructure is a
significant element in achieving the CWA’s water quality objectives. The act’s program of
financial aid for municipal wastewater treatment plant construction is a key contributor to that
effort. Since 1972 Congress has provided more than $88 billion to assist cities in constructing
projects to achieve the act’s requirements for secondary treatment of municipal sewage
(equivalent to 85% reduction of wastes), or more stringent treatment where required by local
water quality conditions. State and local governments have spent more than $25 billion of their
own funds for construction, as well. Federal funds can only be used for construction purposes
(i.e., new plants or upgrades), but not for operation and maintenance of facilities, which are
funded from local sources.
Still, funding needs remain very high: an additional $298 billion, according to the most recent
Needs Survey estimate by EPA and the states, released in June 2010, a 17% increase above the
estimate reported four years earlier.4 This current estimate includes $187.9 billion for wastewater
treatment and collection systems ($26.7 billion more than the previous report), which represent
more than 60% of all needs; $63.6 billion for combined sewer overflow corrections ($1.4 billion
less than the previous estimate); $42.3 billion for stormwater management ($17 billion more than
the previous estimate); and $4.4 billion to build systems to distribute recycled water ($700
million less than the previous estimate).
EPA reported several reasons for increased total needs for wastewater treatment, which were $23
billion higher than in the previous report: improvements needed to meet more protective water
quality standards, rehabilitation of aging infrastructure, and expanding capacity to meet
population growth. Needs for stormwater management increased by $17 billion and were mostly
due to emerging needs to provide “green” infrastructure (e.g., use of wetland and other natural
systems to capture stormwater) as a supplement to traditional stormwater treatment structures,

4 U.S. Environmental Protection Agency, Clean Watersheds Needs Survey 2008, Report to Congress, Washington,
June 2010, http://water.epa.gov/scitech/datait/databases/cwns/upload/cwns2008rtc.pdf.
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according to EPA. The estimates do not explicitly include funding needed to address security
issues, or funding possibly needed for treatment works to adapt to climate change impacts.
Debate over the nation’s efforts regarding wastewater infrastructure was a central and
controversial part of the 1987 amendments to the act. The amendments extended through FY1990
the traditional Title II program of grants for sewage treatment project construction, under which
the federal share was 55% of project costs. The 1987 law initiated a program of grants to
capitalize State Water Pollution Control Revolving Funds (SRFs), which are loan programs, in a
new Title VI. States are required to deposit an amount equal to at least 20% of the federal
capitalization grant in a state fund established pursuant to Title VI. Under the revolving fund
concept, monies used for wastewater treatment construction are repaid by loan recipients to the
states (repayment was not required for grants under the Title II program), to be recycled for future
construction in other communities, thus providing an ongoing source of financing. The
expectation in 1987 was that the federal contributions to SRFs would assist in making a transition
to full state and local financing by FY1995. Although most states believe that the SRF is working
well, continuing large funding needs have delayed the anticipated shift to full state responsibility.
Thus, SRF issues have been prominent on the Clean Water Act reauthorization agenda in recent
Congresses.5
SRF monies may be used for specified activities, including making loans for as much as 100% of
project costs (at or below market interest rates, including interest-free loans), to buy or refinance
cities’ debt obligation, or as a source of revenue or security for payment of principal and interest
on a state-issued bond. SRF monies also may be used to provide loan guarantees or credit
enhancement for localities. Loans made by a state from its SRF are to be used first to assure
progress towards the goals of the act and, in particular, on projects to meet the standards and
enforceable requirements of the act. After states achieve those requirements of the act, SRF
monies also may be used to implement national estuary programs and nonpoint pollution
management. Since the SRF program began, states have used $3.8 billion to assist more than
12,650 nonpoint management projects.
All states have established the mechanisms to administer the new loan programs and have been
receiving SRF capitalization funds under Title VI. Congressional oversight has examined the
progress toward reducing the backlog of wastewater treatment facilities needed to achieve the
act’s water quality objectives, while newer estimates of future funding needs have drawn
increased attention to the role of the SRF program in meeting such needs. Although there has
been some criticism of the SRF program, and debate continues over specific concerns, the basic
approach is well supported. Congress used the clean water SRF as the model when it established
a drinking water SRF in 1996 (P.L. 104-182).6
Although the initial intent was to phase out federal support for this program, Congress has
continued to appropriate SRF capitalization grants to the states, providing an average of $1.35
billion annually in recent years. Table 1 summarizes wastewater treatment funding under Title II
(the traditional grants program) and Title VI (capitalization grants for revolving loan programs)
since the 1987 amendments. This table does not include appropriations for congressionally

5 For further information on the clean water SRF program, see CRS Report 98-323, Wastewater Treatment: Overview
and Background
, by Claudia Copeland.
6 For additional information, see CRS Report RS22037, Drinking Water State Revolving Fund (DWSRF): Program
Overview and Issues
, by Mary Tiemann.
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directed special project grants in individual cities (that is, congressional earmarks), which for
several years represented about 15% of water infrastructure funds.7
Table 1. CWA Wastewater Treatment Funding
(billions of dollars)
Authorizations
Appropriations
Fiscal Year
Title II
Title VI
Title II
Title VI
1986 2.400

1.800

1987 2.400

2.360

1988 2.400

2.300

1989
1.200 1.200 0.941 0.941
1990
1.200 1.200 0.960 0.967
1991 — 2.400
— 2.048
1992 — 1.800
— 1.950
1993 — 1.200
— 1.928
1994 — 0.600
— 1.218
1995 —

— 1.235
1996 —

— 2.074
1997 —

— 0.625
1998 —

— 1.350
1999 —

— 1.350
2000 —

— 1.345
2001 —

— 1.350
2002 —

— 1.350
2003 —

— 1.341
2004 —

— 1.342
2005 —

— 1.091
2006 —

— 0.887
2007 —

— 1.084
2008 —

— 0.689
2009 —

— 0.689
2009 ARRAa —


4.000
2010 —

— 2.100
2011 —

— 1.522
2012 —

— 1.466

7 Issues associated with special project grants are discussed in CRS Report RL32201, Water Infrastructure Projects
Designated in EPA Appropriations: Trends and Policy Implications
, by Claudia Copeland. Congress placed a
moratorium on earmarks in FY2011 and FY2012, but the practice could resume in the future.
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Authorizations
Appropriations
Fiscal Year
Title II
Title VI
Title II
Title VI
TOTAL 7.200
8.4
8.361
35.941
Source: Compiled by CRS.
a. The American Recovery and Reinvestment Act of 2009 (P.L. 111-5) provided $4.0 billion in supplemental
FY2009 appropriations.

One issue of continuing interest is impacts of paying for water infrastructure projects on small
communities, many of which have found it difficult to participate in the SRF loan program. This
is due to a number of factors: many are characterized by narrow or weak tax bases, limited or no
access to capital markets, lower relative household incomes, higher per capita needs, and limited
ability to demonstrate economies of scale. They often find it harder to borrow to meet their
capital needs and pay relatively high premiums to do so. Meeting the special needs of small
towns, through a reestablished grant program, other funding source, or loan program with special
rules, has been an issue of interest to Congress.
Because remaining clean water funding needs are still so large nationally, at issue is whether and
how to extend SRF assistance to address those needs, how to allocate SRF funds among the
states, and how to prioritize projects and funding. Additionally, there is concern about the
adequacy of SRF or other funding specifically for high-cost projects dealing with problems of
overflows from municipal combined and separate sewers which can release partially treated or
untreated wastewaters that harm public health and the environment. EPA estimates that the cost of
projects to control sewer overflows and manage stormwater runoff is nearly $64 billion
nationwide—nearly twice the total of SRF capitalization grants appropriated since 1987. And
more recently, wastewater utilities have sought assistance to assess operational vulnerabilities and
upgrade physical protection of their facilities against possible terrorist attacks that could threaten
the water infrastructure system.8
In October 2010 EPA issued a “Clean Water and Drinking Water Infrastructure Sustainability
Policy” addressing management and pricing of infrastructure funded through SRFs to encourage
conservation and provide adequate long-term funding for future capital needs. EPA is working
with water utilities to promote planning processes that reflect not only public health and water
quality, but also conservation of natural resources and innovative treatment. Further, EPA is
working with states to target SRF assistance to projects that focus on system upgrade and
replacement in existing communities, reflect full life cycle costs of infrastructure assets, and
conserve natural resources or use alternative approaches.
Legislative Responses
Congress has considered water infrastructure funding issues several times since the 107th
Congress, but no legislation other than appropriations has been enacted. (For additional

8 For additional information on many of these topics, see CRS Report RL31116, Water Infrastructure Needs and
Investment: Review and Analysis of Key Issues
, by Claudia Copeland and Mary Tiemann.
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information, see CRS Report R41594, Water Quality Issues in the 112th Congress: Oversight and
Implementation
.)
Throughout this period, several factors have contributed to difficulties in moving bills through the
legislative process. They include Bush Administration opposition to higher authorization levels,
controversies over application of prevailing wage requirements of the Davis-Bacon Act to water
infrastructure projects, and disputes over the formula for allocating clean water SRF grants
among the states.
The issue of the applicability of the Davis-Bacon Act to SRF-funded projects has been especially
controversial, because that act has both strong supporters and critics in Congress and elsewhere. It
requires, among other things, that not less than the locally prevailing wage be paid to workers
employed, under contract, on federal construction work “to which the United States or the District
of Columbia is a party.” Critics of Davis-Bacon say that it unnecessarily increases public
construction costs and hampers competition, while supporters say that it helps stabilize the local
construction industry by preventing competition that would undercut local wages and working
conditions. Under the original SRF program authorization enacted in 1987, the Davis-Bacon Act
applied to so-called “first use” monies provided by a state from its SRF (that is, loans made from
initial federal capitalization grants, but not to subsequent monies provided from repayments to the
SRF). When that authorization expired at the end of FY1994, Davis-Bacon requirements also
expired. Thus, the recent issue has been whether to restore the applicability of those
requirements.9
A second issue that has complicated enactment of legislation is the method of allocating SRF
capitalization grants among the states. CWA Section 205(c)(3) contains a table that identifies each
state’s percentage share of appropriated funds. Changing the formulation of how funds are
distributed matters to every state, because inevitably it results in “winners” and “losers.” But
because the existing statutory allotment has not been revised since 1987, while needs have
changed considerably, the issue is important to considering clean water infrastructure
legislation.10
Despite these specific issues that have stalled legislation, the act’s water infrastructure program is
widely supported both inside and outside Congress. In the 112th Congress, reauthorization
legislation was introduced in the House (H.R. 3145). However, because the House and Senate
focused extensively on reducing federal spending and deficit reduction, proposals concerning new
or expanded federal spending for water infrastructure investments did not advance.
Most policymakers acknowledge that communities face formidable challenges in providing
adequate and reliable water infrastructure services to their citizens, and Congress is considering
ways to help meet those challenges. Several policy options have recently been discussed at
hearings held by House and Senate committees. Some of the options exist and are well
established—such as the SRF program—while some are newer—such as creating a national
infrastructure bank. Some are intended to provide long-term revenue to support infrastructure
financing programs, and some are intended to encourage private participation in providing

9 For information, see CRS Report R41469, Davis-Bacon Prevailing Wages and State Revolving Loan Programs Under
the Clean Water Act and the Safe Drinking Water Act
, by Gerald Mayer and Jon O. Shimabukuro.
10 For additional information on the current statutory formula, see CRS Report RL31073, Allocation of Wastewater
Treatment Assistance: Formula and Other Changes
, by Claudia Copeland.
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wastewater services. At this point, there is no consensus favoring a preferred policy, and many
advocate a combination of options to expand the financing “toolbox.”11
Regulatory Protection of Wetlands
How best to protect the nation’s remaining wetlands and regulate activities taking place in
wetlands has become one of the most contentious environmental policy issues. Much of the
debate has focused on the CWA, which contains a key wetlands regulatory tool. The permit
program in CWA Section 404 requires landowners or developers to obtain permits for disposal of
dredged or fill material that is generated by construction or similar activity into navigable waters
of the United States, including wetlands. Section 404 has evolved through judicial interpretation
and regulatory change to become one of the principal federal tools used to protect wetlands,
although that term appears only once in Section 404 itself and is not defined there. At the same
time, its implementation has come to be seen as intrusive and burdensome to those whose
activities it regulates. At issue today is how to address criticism of the Section 404 regulatory
program while achieving desired goals of wetlands protection in the context of meeting the goals
and objectives of the CWA.12
Unlike the rest of the act, the permit aspects of Section 404 are administered by the U.S. Army
Corps of Engineers, rather than EPA, although the Corps uses environmental guidance jointly
developed with EPA to evaluate permit applications. Other federal agencies including the Fish
and Wildlife Service (FWS) and Natural Resource Conservation Service (NRCS) have more
limited roles in the Corps’ permitting decisions. Tension has existed for many years between the
regulation of activities in wetlands under Section 404 and related laws, on the one hand, and the
desire of landowners to develop property that may include wetlands, on the other hand. The
conflicts over wetlands regulation have for the most part occurred in administrative and judicial
proceedings, as Congress has not amended Section 404 since 1977, when it provided exemptions
for categories of routine activities, such as normal farming and forestry. Controversy has grown
over the extent of federal jurisdiction and impacts on private property, burdens and delay of
permit procedures, and roles of federal agencies and states in issuing permits.
Judicial Proceedings Involving Section 404
One issue involving long-standing controversy and litigation is whether isolated waters are
properly within the jurisdiction of Section 404. Isolated waters—wetlands which are not
physically adjacent to navigable surface waters and may be wet only for portions of the year—
often appear to provide only some of the values for which wetlands are protected, such as flood
control or water purification, even if they meet the technical definition of a wetland.
SWANCC and Rapanos
In 2001, the Supreme Court ruled on the question of whether the CWA provides the Corps and
EPA with authority over isolated waters. The Court’s 5-4 ruling in Solid Waste Agency of
Northern Cook County (SWANCC) v. U.S. Army Corps of Engineers
(531 U.S. 159 (2001)) held

11 For additional information, see CRS Report R42467, Legislative Options for Financing Water Infrastructure, by
Claudia Copeland, William J. Mallett, and Steven Maguire.
12 For additional information, see CRS Report RL33483, Wetlands: An Overview of Issues, by Claudia Copeland.
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that the Corps’ denial of a 404 permit for a disposal site on isolated wetlands solely on the basis
that migratory birds use the site exceeded the authority provided in the act.
In 2006, the Supreme Court revisited issues related to the extent of CWA jurisdiction in two
consolidated cases brought by landowners (Rapanos v. United States; and Carabell v. U.S. Army
Corps of Engineers
) seeking to narrow the scope of the 404 permit program as it applies to
development of wetlands. The issue in both cases had to do with the reach of the CWA to cover
“waters” that were not navigable waters in the traditional sense, but were connected somehow to
navigable waters or “adjacent” to those waters. (The act requires a federal permit to discharge
dredged or fill materials into “navigable waters.”) Many legal and other observers hoped that the
Court’s ruling in these cases would bring greater clarity about the scope of federal jurisdiction.
The Court’s ruling on the two cases was issued on June 19, 2006 (Rapanos, v. United States, 547
U.S. 715 (2006)). In a 5-4 decision, a plurality of the Court, led by Justice Scalia, held that the
lower court had applied an incorrect standard to determine whether the wetlands at issue are
covered by the CWA. Justice Kennedy joined this plurality to vacate the lower court decisions
and remand the cases for further consideration, but he took different positions on most of the
substantive issues raised by the cases, as did four other dissenting Justices.13 Because the several
opinions written by the Justices did not draw a clear line regarding which wetlands and other
waters are subject to federal jurisdiction, one result has been more case-by-case determinations
and continuing litigation. There also has been pressure on the Corps and EPA to clarify the issues
through an administrative rulemaking.
The full extent of impacts on the regulatory program resulting from these decisions still remain
unclear, in part because of different interpretations of both rulings reflected in subsequent federal
court cases. While it continues to be difficult to fully assess how regulatory protection of
wetlands will be affected as a result of the decisions and other possible changes, the remaining
responsibility to protect affected wetlands falls on states and localities. Environmentalists believe
that the Court has misinterpreted congressional intent on the matter, while industry and
landowner groups welcomed the rulings. Policy implications of how much the decisions restrict
federal regulation depend on how broadly or narrowly the opinions are applied. Some federal
courts have interpreted SWANCC and Rapanos narrowly, thus limiting effects on existing permit
rules, while a few have read the decisions more broadly, resulting in a more restrictive
interpretation of regulatory jurisdiction.
Corps/EPA Guidance
Following both the SWANCC and Rapanos rulings, EPA and the Corps issued guidance
documents in 2003, 2007, and 2008 to enable their field staffs to make CWA jurisdictional
determinations in light of the decisions. Some environmental groups have criticized the guidance,
saying that the agencies are substantially limiting the scope of waters that are protected by the
CWA. Industry groups such as developers remain frustrated by what they see as inconsistencies
and delays in obtaining needed permits.
The Obama Administration entered this debate in April 2011, when EPA and the Corps proposed
new guidance to replace the agencies’ 2003 and 2008 guidance (these earlier documents remain in

13 For additional information, see CRS Report RL33263, The Wetlands Coverage of the Clean Water Act (CWA):
Rapanos and Beyond
, by Robert Meltz and Claudia Copeland.
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effect until new guidance is finalized). The new guidance is intended to clarify regulatory
jurisdiction over U.S. waters and wetlands, consistent with the Supreme Court decisions and
agency regulations. Like previous guidance documents, the Obama draft examines current
regulatory definitions of waters that are subject to CWA jurisdiction, such as interstate waters, and
tributaries (at 33 CFR §328.3 and 40 CFR §230.3) in light of the Supreme Court’s rulings to
determine which waters are clearly subject to the CWA, which waters are not, and which waters
require a case-specific analysis in order to determine jurisdiction. The document states that “after
careful review of these opinions, the agencies concluded that previous guidance did not make full
use of the authority provided by the CWA to include waters within the scope of the Act, as
interpreted by the Court.” Based on current interpretations, the agencies expect that
the extent of waters over which the agencies assert jurisdiction under the CWA will increase
compared to the extent of waters over which jurisdiction has been asserted under existing
guidance, though certainly not to the full extent that it was typically asserted prior to the
Supreme Court decisions in SWANCC and Rapanos.14
This conclusion is based on the agencies’ view that the draft guidance clarifies jurisdiction over
some waters that previously were uncertain. EPA and the Corps believe that the resulting
expanded jurisdiction will not be great, in terms of acreage or stream miles.
The guidance proposed by EPA and the Corps quickly generated more controversy. Some critics
argue that the guidance represents over-reaching by the agencies, beyond authority provided by
Congress. Others fault the continued reliance on federal guidance, which is not binding and lacks
the force of law, yet can have significant impact on regulated entities. The agencies accepted
public comment on the revised guidance until July 31, 2011, and they also plan to propose
revisions of existing regulations to further clarify which waters are subject to CWA jurisdiction,
after the guidance is final. However, the schedule for either final guidance or new regulations is
uncertain. Final guidance was submitted to the White House Office of Management and Budget
(OMB) for review in February 2012. But it has not been issued, and no regulatory changes have
been proposed.
Legislative Responses
Congressional committees have held oversight hearings on both the SWANCC and Rapanos
decisions, seeking clarification of interpretations and impacts of the rulings. But the uncertainties
about federal jurisdiction over wetlands and other waters raised by the rulings remain highly
controversial. In response, legislation to overturn the decisions by providing a broad definition of
“waters of the United States” has been introduced regularly since the 107th Congress, and such a
bill was reported by a Senate committee in the 111th Congress (for information, see CRS Report
RL33263, The Wetlands Coverage of the Clean Water Act (CWA): Rapanos and Beyond).
Legislation that instead would narrow the definition of “waters of the United States” also has
been introduced, including in the 112th Congress, as described below.
Environmental advocates and others contend that Congress must clarify the important issues left
unsettled by the Supreme Court’s 2001 and 2006 rulings and by the Corps/EPA guidance. They

14 U.S. Environmental Protection Agency and Department of the Army, Corps of Engineers, “Draft Guidance on
Identifying Waters Protected by the Clean Water Act,” April 27, 2011, p. 3. The proposed revised guidance and related
documents are available at http://water.epa.gov/lawsregs/guidance/wetlands/CWAwaters.cfm.
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also argue that legislation is needed to “reaffirm” what Congress intended when the CWA was
enacted in 1972 and what EPA and the Corps have subsequently been practicing until the two
Supreme Court rulings, in terms of CWA jurisdiction. But critics have questioned the
constitutionality of legislation that has been proposed, and have asserted that it would expand
federal authority, thus likely increasing confusion, rather than settling it.
Obama Administration officials have addressed concerns about the continuing uncertainties
regarding the proper scope of CWA regulatory jurisdiction. In 2009, the heads of EPA, the Corps,
the Department of Agriculture, the Department of the Interior, and the Council on Environmental
Quality jointly wrote to congressional leaders to support the need for legislative clarification of
the issues.15 However, the Administration did not develop or support particular legislation.
While interest in these issues has remained high, future prospects for legislation are highly
uncertain because of the widely differing views of proponents and opponents. However, EPA’s
and the Corps’ efforts to develop revised Rapanos guidance have been controversial and have
received congressional attention. Legislative provisions to prohibit the agencies from funding
activities related to revising the guidance were included in several appropriations bills in the 112th
Congress, but none of these provisions was included in the legislation providing full-year 2012
appropriations for the Corps and EPA (P.L. 112-74), enacted in December 2011. Interest in similar
legislation concerning the guidance has continued with bills such as S. 2245 and H.R. 4965, to
prevent the agencies from finalizing the 2011 draft guidance and S. 2122/H.R. 4304, which would
amend the CWA with a narrow definition of waters that are subject to the act’s jurisdiction.
Many observers believe that, because of the controversies surrounding the CWA guidance, the
Administration decided to delay issuing final guidance until after the 2012 election, but that,
following President Obama’s re-election, final guidance will be issued in 2013. In December,
EPA and the Corps indicated that they would initiate a rulemaking, but no timetable was
announced. The status of the guidance is uncertain, but scrutiny by the 113th Congress is likely to
continue.
Other Clean Water Act Issues
A number of other issues affecting efforts to achieve the goals and objectives of the CWA have
drawn interest recently and been the subject of congressional oversight and legislation. Some
legislators have been highly critical of recent regulatory initiatives, while others have been more
supportive of EPA’s implementation efforts.
Over the past four years, EPA has proposed and promulgated numerous regulations implementing
the CWA and other pollution control statutes that it administers. Critics of the Administration,
both within Congress and outside of it, have accused the agency of reaching beyond the authority
given it by Congress and ignoring or underestimating the costs and economic impacts of these
rules. Republican leaders in the House conducted vigorous oversight of the agency in the 112th
Congress. Bills seeking to overturn specific regulations or to limit the agency’s authority also
were introduced, along with proposals to bar EPA funding for specific activities (see “Continuing
Issue: Appropriations” below). Environmental groups disagree that the agency has overreached,
and EPA itself contends that critics’ focus on the cost of controls obscures the benefits of new

15 See http://epw.senate.gov/public/index.cfm?FuseAction=Majority.PressReleases&ContentRecord_id=64739ae3-
802a-23ad-4c30-36fc58cc1014&Region_id=&Issue_id=.
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regulations, which, EPA estimates, far exceed the costs, while investing in pollution control is an
important source of economic activity, exports, and American jobs. While particular attention is
being paid to the Clean Air Act, a number of EPA’s initiatives concerning the CWA also have
received legislators’ scrutiny.16 Similar attention in the 113th Congress is anticipated.
Chesapeake Bay Restoration
Despite several decades of activity by governments, the private sector, and the general public,
efforts to improve and protect the Chesapeake Bay have been insufficient to meet restoration
goals. Although some specific indicators of Bay health have improved slightly or remained steady
(such as blue crabs and underwater bay grasses), others remain at low levels of improvement,
especially water quality. Overall, the Bay and its tributaries remain in poor health, with polluted
water, reduced populations of fish and shellfish, and degraded habitat and resources. The primary
pollutants causing impairments are nutrients (nitrogen and phosphorus) and sediment discharged
from multiple urban, suburban, and rural sources around the Bay.
In May 2009, President Obama issued an executive order that declared the Bay a “national
treasure” and charged the federal government with assuming a strong leadership role in restoring
the Bay.17 The executive order established a Federal Leadership Committee for the Chesapeake
Bay to develop and implement a new strategy for protecting and restoring the Chesapeake region.
The resulting strategy, released in May 2010, launched major specific environmental initiatives to
establish new clean water regulations on stormwater discharges and pollution discharges from
animal feedlots in the Bay watershed, put new agricultural conservation practices on farms in the
region, and restore land and water habitat.18
A central feature of the overall strategy is EPA’s establishment of a Total Maximum Daily Load
(TMDL) for Chesapeake Bay. Section 303 of the CWA requires states to identify waters that are
impaired by pollution, even after application of pollution controls. For those waters, states must
establish a TMDL to ensure that water quality standards can be attained. A TMDL is essentially a
pollution budget, a quantitative estimate of what it takes to achieve standards, setting the
maximum amount of pollution that a waterbody can receive without violating standards. If a state
fails to do this, EPA is required by the CWA to make its own TMDL determination for the state.
Throughout the United States—including the Chesapeake Bay watershed—more than 20,000
waterways are known to be violating applicable water quality standards and to require a TMDL.19
Lawsuits have been brought with the intention of pressuring EPA and states to develop TMDLs;
under a consent decree in one such lawsuit, EPA was required to establish a Chesapeake Bay
TMDL, which the agency did on December 29, 2010. The Chesapeake Bay TMDL is the largest
single TMDL developed to date. It addresses all segments of the Bay and its tidal tributaries that
are impaired from discharges of nitrogen, phosphorus, and sediment, with a goal of having
TMDL implementation measures in place by 2025. The TMDL allocates needed reductions of
these pollutants to all jurisdictions in the 64,000 square mile watershed. Detailed plans

16 For information, see CRS Report R41561, EPA Regulations: Too Much, Too Little, or On Track?, by James E.
McCarthy and Claudia Copeland.
17 Executive Order 13508, “Chesapeake Bay Protection and Restoration,” 74 Federal Register 23099-23104, May 15,
2009.
18 For information, see http://www.chesapeakebay.net/news_federalstrategy.aspx?menuitem=51207.
19 For background information, see CRS Report R42752, Clean Water Act and Pollutant Total Maximum Daily Loads
(TMDLs)
, by Claudia Copeland.
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identifying specific reductions are to be developed by the six states located in the Chesapeake
Bay watershed in Watershed Implementation Plans (WIPs).20
As part of the TMDL development process, Chesapeake Bay jurisdictions are to prepare WIPs
identifying specific control measures to achieve needed pollutant reductions from point sources
(i.e., industrial and municipal facilities) and nonpoint sources (i.e., farms and forests), as well as
two-year milestones to implement the plans. The first phase of WIPs, providing a general outline
of steps that states will take to implement the TMDL, were developed in December 2010. EPA is
now reviewing Phase II WIPs developed by states to provide more localized identification of
controls and best management practices needed to meet the goals of the TMDL.
EPA’s TMDL plans and the overall federal Bay restoration strategy under the executive order are
controversial with a number of groups that are concerned about the likely mandatory nature of
many of EPA’s and states’ upcoming actions. Legal challenges to the TMDL were brought by
agricultural and home builder groups, who argue that EPA has exceeded its CWA authority. On
the other hand, environmental activists in particular are pleased that the federal government is
now asserting a leadership role to restore the Bay and have supported legislation that would
codify requirements for the Bay TMDL in the CWA, while authorizing grants and other assistance
for implementing required measures.
The 112th Congress expressed interest in early implementation of the Chesapeake Bay TMDL,
with particular interest in impacts of the plan on agricultural sources in the Bay watershed. A
House Agriculture subcommittee held oversight hearings in March and November 2011. In
addition, legislation was introduced (H.R. 4153) that would give states, not EPA, authority to set
nutrient and sediment limits for the Bay and would increase USDA’s role in Bay restoration.
Additional oversight could be on the agenda of the 113th Congress, especially if pending legal
challenges to the TMDL are unsuccessful.
Florida Nutrient Water Quality Standards
The CWA directs states to adopt water quality standards for their waters and authorizes EPA to
promulgate new or revised standards if a state’s actions fail to meet CWA requirements. Water
quality standards consist of designated uses, criteria to protect the designated uses, and an
antidegradation statement. They serve as the framework for pollution control measures specified
by states for individual sources.
Florida waters are severely impaired by nutrients (nitrogen and phosphorus) from diverse sources
including agriculture and livestock, municipal and industrial wastewater discharges, and urban
stormwater runoff. EPA determined in 2009 that Florida’s existing narrative water quality
standards for nutrients must be revised in the form of numeric criteria that will enable Florida to
better control nutrient pollution. In 2009 EPA entered into a consent decree with environmental
litigants requiring the agency to promulgate numeric nutrient water quality standards for Florida.
To meet the legal deadline, EPA issued the first phase of these standards on November 15, 2010,
establishing standards for lakes and flowing waters in the state. The EPA rule does not establish
any requirements directly applicable to regulated entities or other sources of nutrient pollution.
Water quality standards do not have the force of law until the state translates them into permit
limits or otherwise imposes pollution control requirements on dischargers in the state.

20 For information on the TMDL, see http://www.epa.gov/chesapeakebaytmdl/.
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The rule has not yet gone into effect, as EPA delayed the effective date to prepare for
implementation and state efforts to develop a rule that EPA could approve. In response to
criticism of the proposed standards, EPA delayed the effective date of the 2010 rule for 15
months, to allow local governments, businesses, and the state of Florida time to review the
standards and develop implementation strategies. While few dispute the need to reduce nutrients
in Florida’s waters, EPA’s actions have been controversial, involving disputes about the data
underlying the proposal, potential costs of complying with numeric standards when they are
incorporated into discharge permit limitations, and disputes over administrative flexibility.
EPA has said all along that it prefers that Florida implement its own numeric nutrient water
quality criteria, and in June 2012 the state submitted revised standards with numeric nutrient
criteria. In response, EPA indicated to the state that the agency likely would approve the
standards, at which time the agency would initiate administrative action to repeal the 2010 federal
rule. Consequently, EPA delayed the effective date of the 2010 rule several times to allow the
state to complete its process and to avoid confusion that could occur if federal criteria became
effective while state criteria are being reviewed.
At the same time, separate legal challenges to the 2010 rule were filed in federal court by
environmental advocates, several industry groups, and Florida’s agriculture commissioner. In
February 2012, a federal court ruling largely upheld EPA’s authority and methodology in setting
numeric criteria for nutrient pollution in Florida waters, but it remanded a portion of the rule
concerning numeric criteria for streams, saying they were arbitrary and capricious.
Further, EPA’s deadline for issuing the second phase of standards, for estuaries, coastal waters
and flowing waters in the South Florida Region, also was extended several times to allow the
state to develop its own standards.
In March 2013, EPA and the state reached agreement on steps that will put the state in charge of
determining numeric limits on nutrient pollution in Florida waterways. Groundwork for the
agreement was laid in November when EPA approved the state’s June 2012 submission for lakes,
rivers, streams, and some estuaries. Under the March agreement, Florida will move forward with
rulemaking and legislation this year to complete the job of setting numeric nutrient criteria for
Florida waterways. The proposed state legislation would require completion of nutrient criteria
rulemaking for remaining coastal and estuarine waters by December 1, 2014, and establishment
of interim nutrient standards until then. EPA issued a statement saying that the agency is prepared
to withdraw federal rules for any waters that become covered by state law that meets
requirements of the CWA.21
Industry groups endorsed the agreement. However, it was criticized by environmental advocacy
groups, who said that the plan lacks many elements that EPA previously said were essential and
fails to cover large portions of the state’s waters by, for example, exempting tidal waters, marine
lakes, and flowing waters in the southern portion of the state, unless they are being used for
“frequent recreation.” Environmental groups could pursue legal challenge of EPA’s action.
Some industry groups fear that EPA’s actions in Florida—even if now resolved by the March
2013 agreement—will be a precedent for similar regulatory action elsewhere. For example,
although EPA officials have said they have no specific plans to do so, environmental advocacy

21 For additional information, see http://www.epa.gov/lawsregs/rulesregs/florida_index.cfm.
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groups have petitioned or filed lawsuits seeking to require EPA to establish numeric nutrient
water quality standards in Kansas and for the Upper Mississippi River Basin (in July 2012, EPA
denied the petition seeking similar federal water quality standards for the Upper Mississippi River
Basin).
Nonetheless, EPA’s actions drew attention in the 112th Congress. Legislation approved by the
House in July 2011 (H.R. 2018) would have restricted EPA’s oversight of state water quality
standards by allowing the agency to promulgate a water quality standard for a state only if EPA
has previously approved the state’s standard and the state concurs that a new or revised standard
is necessary. Likewise, the House Appropriations Committee included a general provision in H.R.
2584, FY2012 appropriations for EPA, that would have barred EPA from spending funds to
implement or enforce the standards that were issued in 2010. This provision was not included in
legislation providing full-year 2012 appropriations for EPA (P.L. 112-74), enacted in December
2011. Separate legislation also was introduced to limit EPA’s authority to promulgate numeric
nutrient criteria in Florida (H.R. 3856/S. 2115). Even with EPA’s approval of Florida’s rules,
controversies persist, and attention to these issues is likely to continue in the 113th Congress.
Mountaintop Mining in Appalachia
Mountaintop removal coal mining involves removing the top of a mountain in order to recover
the coal seams contained there. This practice occurs in six Appalachian states (Kentucky, West
Virginia, Virginia, Tennessee, Pennsylvania, and Ohio). It creates an immense quantity of excess
spoil, which is typically placed in nearby valleys, burying streams that flow through the valleys.
Critics say that, as a result of valley fills, stream water quality and the aquatic and wildlife habitat
that streams support are destroyed. The mining industry argues that mountaintop mining is
essential to conducting surface coal mining in the Appalachian region and that surface coal
mining would not be economically feasible there if producers were restricted from using valleys
for the disposal of mining overburden.22
Mountaintop mining is regulated under several laws, including the CWA Section 404 permit
program (discussed above) and the Surface Mining Control and Reclamation Act. In June 2009,
officials of EPA, the Corps of Engineers, and the Department of the Interior’s Office of Surface
Mining and Reclamation (OSM) signed a Memorandum of Understanding outlining a series of
administrative actions under these laws to reduce the harmful environmental impacts of
mountaintop mining and surface coal mining in Appalachia. The plan includes a series of near-
term and longer-term actions that emphasize specific steps, improved coordination, and greater
transparency of decisions. The actions are being implemented through regulatory proposals,
guidance documents, and review of pending applications for permits to authorize mountaintop
mining-valley fill operations. In July 2009, the Army Corps suspended the use of a particular
CWA general permit for surface coal mining activities in Appalachia and proposed a rule to
prohibit its use entirely and issued a final rule in February 2012 to apply more stringent CWA
rules to these coal mining operations.23

22 For additional information, see CRS Report RS21421, Mountaintop Mining: Background on Current Controversies,
by Claudia Copeland.
23 For information, see CRS Report 97-223, The Army Corps of Engineers’ Nationwide Permits Program: Issues and
Regulatory Developments
, by Claudia Copeland.
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Also in 2009 EPA and the Corps began conducting detailed evaluations of 79 pending CWA
permit applications for surface mining activities in order to limit environmental impacts of the
proposed activities under a process called Enhanced Coordination Procedures (ECP). Coal
industry groups and coal state officials contended that the ECP process resulted in costly delay in
issuance of permits. They challenged the process in federal court, and in October 2011, the court
struck down the ECP as an unlawful transfer of legal authority from the Corps to EPA.24 The
agencies are continuing to review permit applications for surface coal mining projects in
Appalachia under existing rules, but not the vacated ECP.
In July 2011 EPA issued guidance on review of CWA Section 402 and 404 permit requests for
surface coal mining in Appalachia. The guidance tightened oversight of permit reviews in several
ways, most notably by establishing two benchmarks for stream conductivity, which is a measure
of the level of salinity in water and is a proxy for dissolved solids in stream waters associated
with mining activity that may contribute to toxicity. The guidance has been very controversial
with industry. The House Transportation Subcommittee on Water Resources and Environment
held hearings on these issues in May 2011. A hearing also was held by the House Government
Reform and Oversight Committee in July 2011. In July 2012, the same federal court that struck
down the ECP also invalidated the 2011 guidance document intended to help assess a mine’s
water quality impacts, ruling that EPA had overstepped its statutory authority. The government
has filed a notice to appeal both of these rulings.
In the 112th Congress (as in several prior Congresses), legislation intended to sharply restrict the
practice of mountaintop mining was introduced (H.R. 1375, the Clean Water Protection Act). It
would have narrowed the CWA definition of “fill material,” and thus narrowed the types of
materials that can be discharged into U.S. waters under a Section 404 permit. The significance of
the bill is that discharges of materials that are not eligible for a Section 404 permit are regulated
under CWA Section 402. Because Section 402 discharge requirements are more restrictive than
those for Section 404, some discharges that could be permitted under Section 404 cannot be
authorized under Section 402. Supporters favored making it more difficult to use Section 404 to
authorize activities that they consider to be environmentally harmful. On the other hand, critics
said that, as a practical matter, economically important activities such as coal mining could not
meet the more stringent limitations of a Section 402 permit and, thus, would be infeasible.
Additionally, legislation intended to restrict the Administration’s recent regulatory actions also
was introduced in the 111th Congress (H.R. 6113 and S. 3933, the Electricity Reliability
Protection Act of 2010). This bill would have prohibited EPA, the Corps, and OSM from
administering or enforcing any policy or procedure that was announced in the June 2009 MOU or
the 2010 EPA draft permitting guidance (which was finalized in July 2011) unless they are
contained in promulgated regulations. In the 112th Congress, similar legislation was not
introduced, but was included as an amendment to a House-passed bill providing FY2011
appropriations for EPA and other agencies, although that appropriations bill was not enacted.
Similar language also was included in bills providing FY2012 appropriations for the Corps (§109
of H.R. 2354), approved by the House in July 2011, and EPA (§433 of H.R. 2584), considered by
the House in July 2011. None of these provisions was included in omnibus legislation providing
full-year 2012 appropriations for the Corps and EPA (P.L. 112-74), enacted in December 2011.

24 At the time of the court’s ruling, 8 of the 79 projects under ECP review had received permits; 50 permit applications
had been withdrawn by the applicants; 3 project reviews were underway or nearly complete; and 18 reviews had not yet
begun.
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Another aspect of the mountaintop mining issue that has drawn congressional attention is EPA’s
2011 veto of a CWA Section 404 permit for a surface coal mining operation in West Virginia, the
Spruce No. 1 mine. In response, several bills were introduced in the 112th Congress to limit or
prohibit EPA’s ability to exercise this veto authority.25 One proposal (H.R. 2018), passed by the
House in July 2011, would bar EPA from vetoing a 404 permit without concurrence of the state in
which the discharge would originate. EPA’s veto of the permit was challenged, and in March
2012, a federal district court overturned the veto, ruling that EPA had exceeded its statutory
authority in the Spruce No. 1 action.26 The government is appealing the district court’s ruling.
The government’s multiple actions on mountaintop mining—which some critics consider part of a
“War on Coal”—are likely to continue in 2013, as is congressional interest.
The Relationship Between CWA and FIFRA
In recent years, federal courts have held that aerial application of a pesticide over and into U.S.
waters requires authorization under the CWA’s National Pollutant Discharge Elimination System
(NPDES) permit program, even when the pesticide use meets other requirements of federal law,
including the Federal Insecticide, Fungicide, and Rodenticide Act (FIFRA). These decisions drew
the attention of many pesticide applicators, including public health entities (such as mosquito
control districts), concerned with how the rulings might affect their need to control pests
associated with diseases such as the West Nile virus. In 2006, EPA finalized a rule seeking to
resolve the conflict over the regulatory scope of the CWA and FIFRA related to pesticide use, in
light of the recent litigation, by promulgating clarifying circumstances under which a CWA
permit is or is not required for activities carried out pursuant to FIFRA. However, in 2009, a
federal court rejected EPA’s argument that residual and excess pesticides do not require a CWA
permit because they are adequately regulated by FIFRA, and the court vacated the rule.27 In
response, EPA developed a general CWA permit for pesticide applications covered by the ruling.28
General permits are intended to minimize regulatory burdens on pesticide applicators and state
permitting officials, but there still has been significant concern about impacts of EPA’s actions.
EPA issued the pesticide general permit on October 31, 2011, as required by the court.29 EPA
estimates that the universe of affected activities that for the first time will be subject to CWA
permits is approximately 5.6 million applications annually, which are performed by 365,000
applicators covering four use patterns: (1) mosquito and other flying insect pest control; (2)
aquatic weed and algae control; (3) aquatic nuisance animal control; and (4) forest canopy pest
control. Under the final permit, pesticide discharges that occurred before January 12, 2012, were
automatically covered, but those occurring after that date will have to apply for coverage. EPA
and states are now implementing the permit requirements.30

25 For background on the veto, see CRS Report RS21421, Mountaintop Mining: Background on Current Controversies,
by Claudia Copeland.
26 Mingo Logan Coal Co. v. EPA, __F.Supp. 2d __, 2012 WL975880 (D.D.C. 2012).
27 National Cotton Council of America v. U.S. Environmental Protection Agency, 553 F.3d 927 (6th Cir. 2009).
28 For additional information, see CRS Report RL32884, Pesticide Use and Water Quality: Are the Laws
Complementary or in Conflict?
, by Claudia Copeland.
29 U.S. Environmental Protection Agency, “Final National Pollutant Discharge Elimination System (NPDES) Pesticide
General Permit for Point Source Discharges From the Application of Pesticides; Notice of final permit,” 76 Federal
Register
68750-68756, November 7, 2011.
30 The EPA pesticide general permit applies in six states where EPA is the permitting authority (Alaska, Idaho,
(continued...)
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In spite of EPA’s efforts to issue a general permit to respond to the 2009 court ruling, legislation
to affirm that a CWA permit is not required for use of FIFRA-approved pesticides has received bi-
partisan support. In the 112th Congress, the House passed H.R. 872, a bill that would amend
FIFRA and the CWA to provide that neither EPA nor a state may require a CWA permit for
discharge of a pesticide whose use has been authorized pursuant to FIFRA. The Senate
Agriculture Committee approved the bill without amendment in June 2011. Although legislation
was not enacted before EPA issued the final permit on October 31, 2011, some legislators
reportedly also discussed compromise legislation that would provide for a temporary permit
moratorium and an EPA study of impacts of pesticide discharges. Language identical to H.R. 872
was included in 2012 farm bill legislation approved by the House Agriculture Committee (H.R.
6083) and in other legislation, as well (S. 1720, S. 2365, and S. 3605). Many observers expect
that efforts to overturn the permit requirement through legislation will continue in the 113th
Congress.
CWA Permits for Logging Road Discharges
Another federal court ruling concerning the extent of CWA permit requirements has drawn public
and congressional attention. In Northwest Environmental Defense Center v. Brown (640 F.3d
1063 (9th Cir. 2011)), the Ninth Circuit held that stormwater runoff from certain logging roads
that is collected by and discharged from a system of ditches, culverts, and channels is a point
source for which a CWA NPDES permit is required. This ruling invalidated EPA’s position in
regulations since 1976, that stormwater runoff from logging roads is nonpoint source pollution
that does not require such a permit, even if the runoff is channeled and discharged through a
discrete conveyance. Environmental groups contend that timber hauling on logging roads is a
major source of sediment (rocks, dirt, gravel) that flows into streams and harms aquatic life.
Critics of the court’s decision say that the existing process has worked well for 35 years, with
states regulating runoff and EPA not requiring permits. In response to the ruling, legislation was
introduced in the 112th Congress that would amend the CWA to exempt any silviculture activity
from requiring an NPDES permit under CWA Section 402 (H.R. 2541/S. 1369). Similar
legislative language was included in P.L. 112-74, omnibus legislation providing full-year FY2012
appropriations for EPA, which was enacted in December 2011. The provision prohibited EPA
until September 30, 2012, from requiring an NPDES permit, or requiring states to require such an
NPDES permit, for stormwater runoff from roads associated with silviculture.
In June 2012, the Supreme Court granted a petition by timber industry groups and others,
including a number of states, to review the logging roads ruling. The U.S. solicitor general asked
the Court to let the appeals court ruling stand and to not accept the petition for certiorari, because
EPA stated that it would issue a rule to nullify the ruling and specify that logging roads do not
need discharge permits for stormwater runoff. Given the September 30 end to the congressional
ban, EPA moved quickly on the rule, which the EPA Administrator signed on November 30, three
days before the Supreme Court heard arguments in the case.31

(...continued)
Massachusetts, New Hampshire, New Mexico, and Oklahoma), the District of Columbia, most U.S. territories, and on
Indian Tribal lands. Elsewhere, states have developed permits comparable to the federal permit.
31 U.S. Environmental Protection Agency, “Revisions to Stormwater Regulations To Clarify That an NPDES Permit Is
Not Required for Stormwater Discharges From Logging Roads,” 77 Federal Register 72970-72975, December 7, 2012.
For additional information, see CRS Report R42587, The Supreme Court Agrees to Decide Whether Logging Road
Runoff, When Channeled, Requires a Clean Water Act Permit
, by Robert Meltz and Claudia Copeland.
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On March 20, 2013, the Court issued its decision in the case, upholding EPA’s interpretation of its
original stormwater rule as not requiring CWA permits for channeled stormwater runoff from
logging roads.32 In a 7-1 ruling, the Court reversed and remanded the 2011 ruling by the Ninth
Circuit. Justice Antonin Scalia dissented in part, saying he would have affirmed the appeals court
decision because EPA had failed to follow its own regulations. The Court’s ruling did not
specifically address EPA’s November 30 rule, thus, further legal challenge is still possible.
Continuing interest in these issues is likely in the 113th Congress.
Continuing Issue: Appropriations
Clean water policy and program issues also have been addressed regularly by Congress in the
context of annual appropriations acts. EPA’s appropriations are included in the Interior,
Environment, and Related Agencies appropriations acts.33
FY2013 Appropriations
President Obama presented the Administration’s FY2013 budget request in February 2012. It
sought $8.34 billion overall for EPA, or 4.7% below the level enacted for FY2012. The request
included $1.175 billion for clean water SRF capitalization grants, 20% below the FY2012 enacted
level. The request also included $300 million for the Great Lakes Restoration Initiative, which
was created in the FY2010 budget to target the most significant environmental problems of the
Great Lakes ecosystem and to coordinate restoration work of multiple federal agencies.
The House Appropriations Committee approved legislation providing FY2013 funds for EPA in
July (H.R. 6091). As reported, the bill provided $689 million for clean water SRF capitalization
grants (the same level provided in FY2008—see Table 1—and the same level that the Committee
recommended for FY2012). The bill included $250 million for the Great Lakes Restoration
Initiative ($50 million below FY2012 funding), $150.5 million for CWA Section 319 grants for
nonpoint pollution management projects (8.8% below FY2012), and $204.3 million for Section
106 grants for state administration of water quality programs (23% below FY2012).
The legislation as reported included a number of general provisions to prohibit funding for certain
EPA water quality rules, guidelines, and initiatives, including mountaintop mining, new
stormwater regulations, defining waters of the United States, logging roads, Buy American
requirements for water infrastructure projects, and other topics.
The House did not take up H.R. 6091, nor did the Senate act on an EPA appropriations bill
(although in September 2012 the Senate Appropriations Committee released a draft bill with
higher funding levels than in the House bill34). Prior to the start of FY2013 on October 1,
Congress passed and the President signed a continuing resolution bill providing funding for

32 Decker v. Northwest Environmental Defense Center, 2013 Westlaw 1131708 (U.S. Mar. 20, 2013).
33 For additional information, see CRS Report R41594, Water Quality Issues in the 112th Congress: Oversight and
Implementation
, by Claudia Copeland; CRS Report 96-647, Water Infrastructure Financing: History of EPA
Appropriations
, by Claudia Copeland; and CRS Report R42520, Environmental Protection Agency (EPA):
Appropriations for FY2013
, coordinated by Robert Esworthy.
34 See http://www.appropriations.senate.gov/news.cfm?method=news.view&id=fc23708b-fb33-4569-99b4-
6cf0d0254457.
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Water Quality Issues in the 113th Congress: An Overview

government agencies and departments through March 27, 2013 (P.L. 112-175) and generally
funding government at FY2012 levels plus a 0.6% increase.
Before Congress reached agreement on a further continuing resolution to fund EPA and other
government departments for the remainder of FY2013 on March 21, budget sequestration as
required by the Budget Control Act of 2011 took effect on March 1, subjecting programs of EPA
and other discretionary non-defense agencies to a 5% automatic spending cut for 2013.35
Congress agreed to a continuing resolution (P.L. 113-6) that generally funds programs at FY2012
levels, minus the 5% sequestration reduction, but with several modifications to some EPA
programs. In particular, the legislation reduces funds for clean water SRF capitalization grants by
approximately $14 million below the FY2012 level and also requires EPA to rescind $10 million
in previously appropriated but unobligated clean water infrastructure funds. The legislation
directs the Office of Management and Budget to calculate and report to Congress within 30 days
on actual program-specific appropriation levels in the bill, including reductions resulting from
sequestration.

Author Contact Information

Claudia Copeland

Specialist in Resources and Environmental Policy
ccopeland@crs.loc.gov, 7-7227



35 See CRS Report R42972, Sequestration as a Budget Enforcement Process: Frequently Asked Questions, by Megan
S. Lynch.
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