Federal Research and Development Funding: 
FY2012 
John F. Sargent Jr., Coordinator 
Specialist in Science and Technology Policy 
January 26, 2012 
Congressional Research Service 
7-5700 
www.crs.gov 
R41706 
CRS Report for Congress
Pr
  epared for Members and Committees of Congress        
Federal Research and Development Funding: FY2012 
 
Summary 
President Obama has requested $147.911 billion for research and development (R&D) in 
FY2012, a $772 million (0.5%) increase from the FY2010 actual R&D funding level of $147.139 
billion. Congress will play a central role in defining the nation’s R&D priorities, especially with 
respect to two overarching issues: the extent to which the federal R&D investment can grow in 
the context of increased pressure on discretionary spending and how available funding will be 
prioritized and allocated. Low or negative growth in the overall R&D investment may require 
movement of resources across disciplines, programs, or agencies to address priorities.  
Congress incorporated all the regular appropriations acts into two bills, the Consolidated and 
Further Continuing Appropriations Act, 2012 (P.L. 112-55) and the Consolidated Appropriations 
Act, 2012 (P.L. 112-74). P.L. 112-55, incorporating three regular appropriations acts—the 
Agriculture, Rural Development, Food and Drug Administration, and Related Agencies Act; 
Commerce, Justice, State and Related Agencies Act; and Transportation, Housing and Urban 
Development, and Related Agencies Act—was passed by Congress on November 17, 2011, and 
signed into law two days later. P.L. 112-74, incorporating the nine remaining regular 
appropriations acts, was passed by Congress on December 17, 2011, and signed into law by 
President Obama on December 23, 2011.  
Prior to enactment of these bills, Congress had continued government operations into FY2012 
through a series of continuing appropriations acts. P.L. 112-33 provided agency funding initially 
through October 4, 2011. P.L. 112-36 extended funding for all agencies through November 18, 
2011. P.L. 112-55 extended funding through December 16, 2011, for agencies not covered under 
its provisions. For more than a decade, federal R&D has been affected by mechanisms used to 
continue appropriations in the absence of enactment of regular appropriations acts and to 
complete the annual appropriations process. Completion of appropriations after the beginning of a 
fiscal year may cause agencies to delay or cancel some planned R&D and equipment acquisition. 
At the time the President’s FY2012 budget was released, action had not been completed on 
FY2011 full-year funding. In the absence of FY2011 appropriations data, the President’s budget 
compared his FY2012 request to FY2010 appropriations. On April 15, 2011, the Department of 
Defense and Full-Year Continuing Appropriations Act, 2011 (P.L. 112-10) was signed into law. 
Division A of the act provided FY2011 appropriations for the Department of Defense; Division B 
provided full-year continuing funding for FY2011 for all other agencies at their FY2010 levels 
unless otherwise specified in the act. With respect to federal R&D funding overall and to several 
agencies in particular, it is not possible yet to assess the level of funding provided under the act. 
Therefore this report compares the President’s FY2012 funding request to FY2011 levels, where 
possible, and to FY2010 levels elsewhere. This report will be updated as additional information 
about FY2011 R&D funding becomes available. Comparison of the President’s request to enacted 
funding levels is complicated by several factors, including the omission of congressionally 
directed spending from the President’s FY2012 budget request.  
President Obama’s request included increases in the R&D budgets of the three agencies targeted 
for doubling over 7 years by the America COMPETES Act, and over 10 years by the America 
COMPETES Reauthorization Act of 2010 and by President Bush under his American 
Competitiveness Initiative, as measured using FY2006 funding as the baseline. Although 
President Obama supported a 10-year doubling in his FY2010 budget, his FY2012 budget was 
intentionally silent on a timeframe. 
Congressional Research Service 
Federal Research and Development Funding: FY2012 
 
Contents 
Overview.......................................................................................................................................... 1 
Federal R&D Funding Perspectives ................................................................................................ 3 
Agency Perspective ................................................................................................................... 3 
Character of Work, Facilities, and Equipment Perspective ....................................................... 4 
Combined Perspective ............................................................................................................... 5 
Multiagency R&D Initiatives........................................................................................................... 6 
Presidential Initiatives ............................................................................................................... 7 
National Nanotechnology Initiative......................................................................................... 10 
Networking and Information Technology Research and Development Program.................... 10 
U.S. Global Change Research Program................................................................................... 10 
FY2012 Appropriations Status....................................................................................................... 11 
Department of Defense .................................................................................................................. 13 
Department of Homeland Security ................................................................................................ 18 
National Institutes of Health .......................................................................................................... 23 
Department of Energy.................................................................................................................... 30 
National Science Foundation ......................................................................................................... 33 
Department of Commerce.............................................................................................................. 38 
National Institute of Standards and Technology...................................................................... 38 
National Oceanic and Atmospheric Administration ................................................................ 40 
National Aeronautics and Space Administration ........................................................................... 42 
Department of Agriculture............................................................................................................. 45 
Department of the Interior ............................................................................................................. 49 
U.S. Geological Survey ........................................................................................................... 50 
Other DOI Agencies ................................................................................................................ 50 
Environmental Protection Agency ................................................................................................. 51 
Department of Transportation........................................................................................................ 55 
 
Figures 
Figure 1. Doubling of Research Funding for Targeted Accounts:  Appropriations and 
Authorizations Versus Selected Rates........................................................................................... 9 
 
Tables 
Table 1. Federal Research and Development Funding by Agency, FY2010-FY2012 ..................... 4 
Table 2. Federal Research and Development Funding by Character of Work, Facilities, 
and Equipment, FY2010-FY2012 ................................................................................................ 5 
Table 3. Top R&D Funding Agencies by Character of Work, Facilities and Equipment, 
FY2010-FY2012........................................................................................................................... 6 
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Federal Research and Development Funding: FY2012 
 
Table 4. Funding for Targeted Accounts FY2006-FY2010 (Actual), FY2011 (Enacted), 
and FY2012 (Request).................................................................................................................. 9 
Table 5. Alignment of Agency R&D Funding and Regular Appropriations Bills ......................... 12 
Table 6. Department of Defense RDT&E...................................................................................... 17 
Table 7. Department of Homeland Security R&D and Related Programs..................................... 22 
Table 8. National Institutes of Health Funding.............................................................................. 28 
Table 9. Department of Energy R&D and Related Programs ........................................................ 32 
Table 10. National Science Foundation ......................................................................................... 37 
Table 11. NIST............................................................................................................................... 40 
Table 12. NOAA R&D................................................................................................................... 42 
Table 13. NASA R&D ................................................................................................................... 44 
Table 14. U.S. Department of Agriculture R&D............................................................................ 48 
Table 15. Department of the Interior R&D.................................................................................... 51 
Table 16. Environmental Protection Agency S&T Account .......................................................... 54 
Table 17. Department of Transportation R&D .............................................................................. 57 
 
Contacts 
Author Contact Information........................................................................................................... 57 
 
Congressional Research Service 
Federal Research and Development Funding: FY2012 
 
Overview 
The 112th Congress continues to take a strong interest in the health of the U.S. research and 
development (R&D) enterprise and in providing support for federal R&D activities. However, 
widespread concerns about the federal debt and recent and projected federal budget deficits are 
driving difficult decisions involving prioritization of R&D within the context of the entire federal 
budget and among competing priorities within the federal R&D portfolio. The U.S. government 
supports a broad range of scientific and engineering research and development. Its purposes 
include addressing specific concerns such as national defense, health, safety, the environment, 
and energy security; advancing knowledge generally; developing the scientific and engineering 
workforce; and strengthening U.S. innovation and competitiveness in the global economy. Most 
of the R&D funded by the federal government is performed in support of the unique missions of 
the funding agencies. The federal government has played an important role in supporting R&D 
efforts that have led to scientific breakthroughs and new technologies, from jet aircraft and the 
Internet to communications satellites and defenses against disease. 
Status of FY2011 Appropriations and Its Effect on the Analysis in This Report 
During the 111th Congress, 2 of the 12 regular appropriations bills passed the House (the Transportation, Housing 
and Urban Development, and Related Agencies Appropriations Act, 2011, and the Military Construction and Veterans 
Affairs and Related Agencies Appropriations Act, 2011); none passed the Senate. For nearly half of FY2011, federal 
departments and agencies were funded under a series of interim continuing resolutions (CRs).1 On April 14, 2011, 
the House and Senate passed H.R. 1473, the Department of Defense and Ful -Year Continuing Appropriations Act, 
2011, providing funding to federal agencies for the remaining portion of FY2011. The bill was signed into law (P.L. 
112-10) by President Obama on April 15, 2011. Because this bill was passed after the release of the President’s 
FY2012 budget request and agency budget justifications, these documents did not include the enacted full-year 
FY2011 appropriations figures. Instead, in these documents, comparisons that typical y would have been made 
between the FY2012 budget request and the FY2011 enacted appropriations were instead made between the FY2012 
budget request and the FY2010 enacted appropriations. Aside from the appropriations provided for the Department 
of Defense in Division A of the law, the appropriations included in P.L. 112-10 adopt the FY2010 agency 
appropriations except as specifical y noted. Many of the changes from the FY2010 level affect budget accounts that 
include both R&D and non-R&D funding with no specificity as to how the changes are to be allocated among activities 
within the account. As a result, it is unclear how much the funding changes in these accounts will affect R&D levels of 
the agencies. Where it is possible to discern the effects of P.L. 112-10 on federal R&D funding, these figures are 
included in this report; where it is not possible, this report notes that the levels will be included as additional 
information becomes available. In many cases, provisions in P.L. 112-10 require agencies to submit spending plans 
providing such information. 
Congress will play a central role in defining the nation’s R&D priorities as it makes decisions 
with respect to the size and distribution of aggregate, agency, and programmatic R&D funding. 
Some Members of Congress have expressed concerns about the level of federal funding in light 
of the current federal fiscal condition, deficit, and debt. As Congress acts to complete the FY2012 
appropriations process it faces two overarching issues: the extent to which the federal R&D 
investment can grow in the context of increased pressure on discretionary spending and how 
available funding will be prioritized and allocated. Low or negative growth in the overall R&D 
investment may require movement of resources across disciplines, programs, or agencies to 
address priorities.  
                                                 
1 For more detailed discussion of recent continuing resolutions as well as information on the history, nature, scope, and 
duration of continuing resolutions, see CRS Report RL30343, Continuing Resolutions: Latest Action and Brief 
Overview of Recent Practices, by Sandy Streeter.  
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Federal Research and Development Funding: FY2012 
 
President Obama’s proposed FY2012 budget, released on February 14, 2011, includes $147.911 
billion for R&D in FY2012, a 0.5% increase over the actual FY2010 R&D funding level of 
$147.139 billion.2 Adjusted for inflation, the President’s FY2012 R&D request represents a 
decrease of 2.2% from the FY2010 level.3 This report provides government-wide, multi-agency, 
and individual agency analyses of the President’s FY2012 request as it relates to R&D and related 
activities.  
Among its provisions, the President’s proposed FY2012 R&D funding maintains an emphasis on 
increasing funding for the physical sciences and engineering, an effort consistent with the intent 
of the America COMPETES Act (P.L. 110-69) and the America COMPETES Reauthorization Act 
of 2010 (P.L. 111-358). These acts seek to achieve this objective by authorizing increased funding 
for three agencies with a strong R&D emphasis in these disciplines: the Department of Energy 
Office of Science, the National Science Foundation, and the Department of Commerce National 
Institute of Standards and Technology’s core laboratory research and R&D facilities construction 
funding. Appropriations provided to these agencies have fallen short of the levels authorized in 
P.L. 110-69. (See “Multiagency R&D Initiatives” for detailed information.) 
More broadly, in a 2009 speech before members of the National Academy of Sciences, President 
Obama put forth a goal of increasing the national investment in R&D to more than 3% of the U.S. 
gross domestic product (GDP). President Obama did not provide details on how this goal might 
be achieved (e.g., how much would be funded through increases in direct federal R&D funding or 
through indirect mechanisms such as the research and experimentation (R&E) tax credit4); 
however, doing so likely would require a substantial increase in public and private investment. In 
2008, total U.S. R&D expenditures were $397.629 billion,5 or approximately 2.77% of GDP.6 
Based on 2008 figures, reaching President Obama’s 3% goal would require an 8.4% real increase 
(above inflation) in national R&D funding. Increasing direct federal R&D funding by 8.4% in 
FY2012 would have required an increase of $12.4 billion above President Obama’s request. 
In addition, advocates for increased federal R&D funding—including President Obama’s science 
advisor, John Holdren—have raised concerns about the potential harm of a “boom-bust” approach 
to federal R&D funding (i.e., rapid growth in federal R&D funding followed by much slower 
growth, flat funding, or even decline).7 The biomedical research community experienced a variety 
of challenges resulting from such a circumstance following the five-year doubling of the NIH 
                                                 
2 Funding levels included in this document are in current dollars unless otherwise noted. Inflation diminishes the 
purchasing power of federal R&D funds, so an increase that does not equal or exceed the inflation rate may reduce real 
purchasing power.  
3 As calculated by CRS using the GDP (chained) price index from Table 10.1, Gross Domestic Product and Deflators 
Used In The Historical Tables: 1940–2016, from the President’s FY2012 budget. Available at 
http://www.whitehouse.gov/sites/default/files/omb/budget/fy2012/assets/hist10z1.xls. 
4 The research and experimentation tax credit is frequently referred to as the research and development tax credit or 
R&D tax credit, through the credit does not apply to development expenditures. For additional information about the 
R&E tax credit, see CRS Report RL31181, Research Tax Credit: Current Law, Legislation in the 112th Congress, and 
Policy Issues, by Gary Guenther. 
5 Preliminary estimate of 2009 U.S. R&D expenditures, National Science Foundation, National Patterns of R&D 
Resources:2008, NSF 10-314, Arlington, VA, March 2010, http://www.nsf.gov/statistics/nsf10314/. 
6 Based on 2009 U.S. GDP of $14,369.1 billion as reported by the U.S. Department of Commerce Bureau of Economic 
Analysis, National Income and Product Accounts Table, Table 1.1.5, http://www.bea.gov/national/nipaweb/
TableView.asp?SelectedTable=5&Freq=Qtr&FirstYear=2007&LastYear=2009. 
7 Jennifer Couzin and Greg Miller, “NIH Budget: Boom and Bust,” Science, vol. 316, no. 5823 (April 2007), pp. 356-
361, at http://www.scienceonline.org/cgi/content/full/316/5823/356. 
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budget that was completed in FY2003. With the NIH doubling came a rapid expansion of the 
nation’s biomedical research infrastructure (e.g., buildings, laboratories, equipment), as well as 
rapid growth in university faculty hiring, students pursuing biomedical degrees, and grant 
applications to NIH. After the doubling, however, the agency’s budget fell each year in real terms 
from FY2004 to FY2009. Critics assert there have been a variety of damages from this boom-bust 
cycle, including interruptions and cancellations of promising research, declining share in the 
number of NIH grant proposals funded, decreased student interest in pursuing graduate studies, 
and reduced employment prospects for the large number of biomedical researchers with advanced 
degrees. According to then-NIH Director Elias Zerhouni, the damages have been particularly 
acute for early- and mid-career scientists seeking a first or second grant.8 
Analysis of federal R&D funding is complicated by several factors, including the Obama 
Administration’s omission of congressionally directed spending from the FY2012 budget request 
and inconsistency among agencies in the reporting of R&D. As a result of these and other factors, 
the R&D agency figures reported by the White House Office of Management and Budget (OMB) 
and White House Office of Science and Technology Policy (OSTP), and shown in Table 1, may 
differ somewhat from the agency budget analyses that appear later in this report. 
Another factor complicating analysis of the President’s FY2012 budget request is the inclusion of 
the Wireless Innovation (WIN) Fund, a part of the Administration’s Wireless Innovation and 
Infrastructure Initiative. The WIN Fund would receive $3 billion over seven years (FY2012-
FY2018) from receipts generated through electromagnetic spectrum auctions. According to the 
President’s request, the WIN funds would support research, test beds, and applications 
development to support leading-edge wireless technologies and applications for public safety, 
Smart Grid, telemedicine, distance learning, and other broadband capabilities and to facilitate 
spectrum relocation. Under the President’s budget, if the WIN Fund is established, several 
agencies would receive funding for these purposes, among them the Department of Defense, the 
Department of Energy, the Department of Commerce, and the National Science Foundation. 
Federal R&D Funding Perspectives 
Federal R&D funding can be analyzed from a variety of perspectives that provide unique insights. 
Agency Perspective 
The authorization and appropriations process views federal R&D funding primarily from agency 
and program perspectives. Table 1 provides data on R&D by agency for FY2010 (actual) and 
FY2012 (request) as reported by OMB, and has a column for FY2011 that will be updated as 
additional information becomes available.  
Under President Obama’s FY2012 budget request, six federal agencies would receive 94.8% of 
total federal R&D funding: Department of Defense (DOD), 51.8%; Department of Health and 
Human Services (HHS) (primarily the National Institutes of Health, NIH), 21.9%; Department of 
Energy (DOE), 8.8%; National Aeronautics and Space Administration (NASA), 6.6%; National 
                                                 
8 Ibid. For additional information on NIH R&D funding issues, see CRS Report R41705, The National Institutes of 
Health (NIH): Organization, Funding, and Congressional Issues, by Judith A. Johnson and Pamela W. Smith. 
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Federal Research and Development Funding: FY2012 
 
Science Foundation (NSF), 4.3%; and Department of Agriculture (USDA), 1.5%. This report 
provides an analysis of the R&D budget requests for these agencies, as well as for the 
Departments of Commerce (DOC), Homeland Security (DHS), the Interior (DOI), and 
Transportation (DOT), and the Environmental Protection Agency (EPA). In total, these agencies 
account for more than 98% of current and requested federal R&D funding. 
The largest agency R&D increases in the President’s FY2012 request are for DOE, $2.153 billion 
(19.9%); HHS, $919 million (2.9%, due entirely to a $1.019 billion increase in R&D funding for 
NIH); NSF, $875 million (16.1%); NASA, $559 million (6.0%); and DOC, $376 million (28.0%). 
Under President Obama’s FY2012 budget request, DOD R&D funding would be reduced by 
$3.969 billion (-4.9%), USDA R&D by $461 million (-17.7%), Department of Veterans Affairs 
R&D by $144 million (-12.4%), and EPA R&D by $11 million (-1.9%). 
Table 1. Federal Research and Development Funding by Agency, FY2010-FY2012 
(Budget authority, dollar amounts in millions) 
Dollar 
Change, 
Percent 
FY2010 
FY2012 
2010 to 
Change, 2010 
Department/Agency 
Actual FY2011a 
Request 
2012 
to 2012 
Agriculture 2,611 
 
2,150 
-461 
-17.7 
Commerce 1,344 
 
1,720 
376 
28.0 
Defense 80,602 
 
76,633 
-3,969 
-4.9 
Energy 10,836 
 
12,989 
2,153 
19.9 
Environmental Protection 
Agency 590 
 
579 
-11 
-1.9 
Health and Human Services 
31,424 
 
32,343 
919 
2.9 
Homeland Security 
887 
 
1,054 
167 
18.8 
Interior 776 
 
727 
-49 
-6.3 
NASA 9,262 
 
9,821 
559 
6.0 
National Science Foundation 
5,445 
 
6,320 
875 
16.1 
Transportation 1,069 
 
1,215 
146 
13.7 
Veterans Affairs 
1,162 
 
1,018 
-144 
-12.4 
Other 1,131 
 
1,342 
211 
18.7 
Totalb 147,139 
 
147,911 
772 
0.5 
Sources: Executive Office of the President, OMB, Analytical Perspectives, Budget of the United States Government, 
Fiscal Year 2012, Table 22-1. 
a.  P.L. 112-10 provides funding, including R&D funding, for al  agencies for the remainder of FY2011. As more 
detailed information becomes available, this column will be updated. 
b.  Totals may differ from the sum of the components due to rounding. 
Character of Work, Facilities, and Equipment Perspective 
Federal R&D funding can also be examined by the character of work it supports—basic research, 
applied research, and development—and funding provided for facilities and acquisition of major 
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Federal Research and Development Funding: FY2012 
 
R&D equipment. (See Table 2.) President Obama’s FY2012 request includes $32.895 billion for 
basic research, up $3.498 billion (11.9%) from FY2010; $33.182 billion for applied research, up 
$3.383 billion (11.4%); $79.414 billion for development, down $3.891 billion (-4.7%); and 
$2.420 billion for facilities and equipment, down $2.218 billion (-47.8%). It is important to note 
that with the projected completion of construction of the International Space Station (ISS) in 
FY2011, beginning in FY2012 NASA funding for operation of the facility is accounted for as 
research; previously, NASA ISS funding was accounted for as “facilities and equipment.”  
Table 2. Federal Research and Development Funding by Character of Work, 
Facilities, and Equipment, FY2010-FY2012 
(Budget authority, dollar amounts in millions) 
Percent 
Dollar 
Change,  
FY2010 
FY2012 
Change, 
2010 to 
 
 Actual 
Request 
2010 to 2012 
2012 
Basic research 
29,937 
32,895 
3,498 
11.9 
Applied research 
29,799 
33,182 
3,383 
11.4 
Development 83,305 
79,414 
-3,891 
-4.7 
Facilities and equipment 
4,638 
2,420 
-2,218 -47.8 
Totala 147,139 
147,911 
772 
0.5 
Source: Executive Office of the President, Office of Science and Technology Policy, Innovation, Education, and 
Infrastructure, Table 1, February 14, 2011. 
a.  Totals may differ from the sum of the components due to rounding. 
Combined Perspective 
Combining these perspectives, federal R&D funding can be viewed in terms of each agency’s 
contribution to basic research, applied research, development, and facilities and equipment. (See 
Table 3.) The federal government is the nation’s largest supporter of basic research, funding 
57.0% of U.S. basic research in 2008,9 primarily because the private sector asserts it cannot 
capture an adequate return on long-term fundamental research investments. In contrast, industry 
funded only 17.7% of U.S. basic research in 2008 (with state governments, universities, and other 
non-profit organizations funding the remaining 25.3%). In the President’s FY2012 budget 
request, the Department of Health and Human Services, primarily the National Institutes of 
Health (NIH), accounts for more than half of all federal funding for basic research.10 
In contrast to basic research, industry is the primary funder of applied research in the United 
States, accounting for an estimated 60.8% in 2008, while the federal government accounted for an 
estimated 32.4%.11 Among federal agencies, HHS is the largest funder of applied research, 
                                                 
9 National Science Foundation, New NSF Estimates Indicate that U.S. R&D Spending Continued to Grow in 2008, NSF 
10-312, January 2010, http://www.nsf.gov/statistics/infbrief/nsf10312/#fn.http://www.nsf.gov/statistics/nsf08318/. 
10 Executive Office of the President, Office of Management and Budget, Analytical Perspectives, Budget of the United 
States Government, Fiscal Year 2012, Table 22-1, February 14, 2011. 
11 National Science Foundation, National Patterns of R&D Resources: 2007 Data Update, NSF 08-318, 2008, 
http://www.nsf.gov/statistics/nsf08318/. 
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accounting for nearly half of all federally funded applied research in the President’s FY2012 
budget request.12 Industry also provides the vast majority of funding for development. Industry 
accounted for an estimated 84.1% in 2008, while the federal government provided an estimated 
14.9%.13 DOD is the primary federal agency funder of development, accounting for 87.7% of 
total federal development funding in the President’s FY2012 budget request.14 
Table 3. Top R&D Funding Agencies by Character of Work, Facilities and Equipment, 
FY2010-FY2012 
(Budget authority, dollar amounts in millions) 
Dollar 
Percent 
FY2010  
FY2012 
Change, 
Change,  
 
Actual 
Request 
2010 to 2012  2010 to 2012 
Basic Research 
 
 
 
 
Health and Human Services 
16,082 
16,614 
532 
3.3 
National Science Foundation 
4,636 
5,310 
674 
14.5 
Energy 3,971 
4,200 
229 
5.8 
Applied Research 
 
 
 
 
Health and Human Services 
15,177 
15,559 
382 
2.5 
Energy 3,407 
4,830 
1,423 
41.8 
Defense 4,984 
4,787 
-197 
-4.0 
Development 
 
 
 
 
Defense 73,734 
69,664 
-4,070 
-5.5 
NASA 5,461 
5,135 
-326 
-6.0 
Energy 2,520 
2,859 
339 
13.5 
Facilities and Equipment 
 
 
 
 
Energy 938 
1,100 
162 
17.3 
National Science Foundation 
482 
443 
-39 
-8.1 
Commerce 269 
282 
13 
4.8 
Source: Executive Office of the President, OMB, Analytical Perspectives, Budget of the United States Government, 
Fiscal Year 2012, February 14, 2011. 
Note: Top funding agencies based on FY2012 request. 
Multiagency R&D Initiatives 
Federal R&D funding can also be viewed in terms of multiagency efforts, such as the National 
Nanotechnology Initiative and presidential initiatives.  
                                                 
12 Executive Office of the President, Office of Management and Budget, Analytical Perspectives, Table 22-1, February 
14, 2011, http://www.whitehouse.gov/sites/default/files/omb/budget/fy2012/assets/spec.pdf. 
13 National Science Foundation, National Patterns of R&D Resources, 2008, http://www.nsf.gov/statistics/nsf08318/. 
14 Executive Office of the President, Office of Management and Budget, Analytical Perspectives, Table 22-1, February 
14, 2011. 
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Presidential Initiatives 
In 2006, President Bush announced his American Competitiveness Initiative which, in part, 
sought to increase federal funding for physical sciences and engineering research by doubling 
funding over 10 years (FY2006-2016) for targeted accounts at three agencies—NSF, all; DOE, 
Office of Science only; and NIST, the scientific and technical research and services (STRS) and 
construction of research facilities (CRF) accounts. 
In 2007, Congress authorized substantial increases for these targeted accounts under the America 
COMPETES Act (P.L. 110-69), setting aggregate authorization levels for FY2008-FY2010 
consistent with a more aggressive seven-year doubling pace.15 However, funding provided for 
these agencies in the Consolidated Appropriations Act, 2008 (P.L. 110-161), the Omnibus 
Appropriations Act, 2009 (P.L. 111-8), and the Consolidated Appropriations Act, 2010 (P.L. 111-
117) fell below these targets.16 (See Table 4 for individual and aggregate agency appropriations.) 
In 2010, Congress passed the America COMPETES Reauthorization Act of 2010 (P.L. 111-358) 
which, among other things, authorized appropriations levels for the targeted accounts for 
FY2011-FY2013.17 The aggregate authorization levels in this act for the targeted accounts are 
consistent with an 11-year doubling path, slower than the America COMPETES Act’s 7-year 
doubling path. Moreover, aggregate FY2011 funding for the targeted accounts was approximately 
$12.280 billion, $1.101 billion less than authorized in the act, setting a pace to double over 16 
years from the FY2006 level—more than twice the length of time originally envisioned in the 
2007 America COMPETES Act and about a third longer than the doubling period established by 
the America COMPETES Reauthorization Act of 2010.18 
In FY2012 President Obama sought funding for the targeted accounts that would have increased 
aggregate funding to $13.947 billion, an increase of $1.667 billion (13.6%) above the estimated 
FY2011 aggregate funding level of $12.280 billion. However, funding provided by the 
Consolidated and Further Continuing Appropriations Act, 2012 (P.L. 112-55) for the NSF and 
NIST accounts falls short of the President’s request: 
•  President Obama requested $7.767 billion for NSF; P.L. 112-55 provides $7.033 
billion. 
•  With respect to the targeted accounts at the National Institute of Standards and 
Technology (NIST): 
•  The President requested $678.9 million for core laboratory research;19 P.L. 
112-55 provides $567.0 million.  
•  The President requested $84.6 million for construction of research 
facilities;20 P.L. 112-55 provides $55.4 million. 
                                                 
15 For additional information, see CRS Report RL34328, America COMPETES Act: Programs, Funding, and Selected 
Issues, by Deborah D. Stine. 
16 In 2009, the American Recovery and Reinvestment Act of 2009 (P.L. 111-5) provided supplemental funding for 
several targeted accounts (approximately $5.202 billion). 
17 For additional information, see CRS Report R41231, America COMPETES Reauthorization Act of 2010 (H.R. 5116) 
and the America COMPETES Act (P.L. 110-69): Selected Policy Issues, coordinated by Heather B. Gonzalez. 
18 All doubling path calculations in this report use FY2006 as the baseline. 
19 NIST core laboratory research is the Scientific and Technical Research and Services (STRS) account. 
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President Obama also requested $5.416 billion for DOE’s Office of Science; Congress has not 
completed the appropriations process for this account. 
In light of budget constraints, the future of the doubling path appears to be in question. In his 
FY2010 Plan for Science and Innovation, President Obama stated that he, like President Bush, 
would seek to double funding for basic research over 10 years (FY2006 to FY2016) at the ACI 
agencies.21 In his FY2011 budget documents, President Obama extended the period over which 
he intended to double these agencies’ budgets to 11 years (FY2006 to FY2017).22 In his FY2012 
budget request, President Obama reiterated his intention to double the federal investment for 
these agencies from their FY2006 levels, though the request did not specify the timeframe during 
which this is to take place.23 In addition, the Historical Tables of the President’s FY2012 
budget—which not only provide retrospective agency data, but also projections of future agency 
budget authority—show aggregate budget authority for the targeted accounts remaining 
essentially flat through FY2015, with a small uptick in FY2016.  
The Administration’s September 1, 2011, Mid-Session Review acknowledged that the doubling 
goal would be delayed: 
[T]he new funding levels set in [the Department of Defense and Full-Year Continuing 
Appropriations Act, 2011] mean delaying the goal of doubling funding for key research and 
development (R&D) agencies....24 
Figure 1 shows aggregate funding for the agencies as a percentage of their FY2006 funding level, 
and illustrates how actual (FY2006-FY2011) and authorized appropriations (FY2008-FY2013) 
compare to different doubling rates using FY2006 as the base year. The thick black line at the top 
of the chart is at 200%, the doubling level. The data used in Figure 1 is in current dollars, not 
constant dollars, therefore the effect of inflation on the purchasing power of these funds is not 
taken into consideration. 
                                                                  
(...continued) 
20 Executive Office of the President, Office of Science and Technology Policy, Innovation, Education, and 
Infrastructure, February 14, 2011, http://www.whitehouse.gov/sites/default/files/microsites/ostp/FY12-rd-fs.pdf. 
21 Executive Office of the President, Office of Science and Technology Policy, The President’s Plan for Science and 
Innovation: Doubling Funding for Key Basic Research Agencies in the 2010 Budget, May 7, 2009, 
http://www.whitehouse.gov/files/documents/ostp/budget/doubling.pdf. 
22 Executive Office of the President, Office of Science and Technology Policy, The President’s Plan for Science and 
Innovation: Doubling Funding for Key Basic Research Agencies in the 2011 Budget, February 1, 2010, 
http://www.whitehouse.gov/sites/default/files/doubling%2011%20final.pdf. 
23 Telephone conversation with OSTP staff, May 23, 2011. 
24 Executive Office of the President, Office of Management and Budget, Mid Session Review, September 1, 2011, p. 2, 
http://www.whitehouse.gov/sites/default/files/omb/budget/fy2012/assets/12msr.pdf. 
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Federal Research and Development Funding: FY2012 
 
Table 4. Funding for Targeted Accounts 
FY2006-FY2010 (Actual), FY2011 (Enacted), and FY2012 (Request) 
(in millions of current dollars)  
FY2006 
FY2007 
FY2008
FY2009
FY2009
FY2010
FY2011 
FY2012 
FY2012 
Agency 
Actual 
Actual 
Actual 
Actual 
ARRA 
Actual 
Enacted 
Request 
Enacted 
NSF 5,646
5,884 
6,084 
6,469
2,402 
6,972
6,860a 7,767
7,033
DOE/Office of Science 
3,632
3,837 
4,083 
4,807
1,633 
4,964
4,843 
5,416
4,889
NIST/core researchb 395
434 
441 
472
220 
515
507 
679
567
NIST/facilities 174
59 
161 172
360 147
70  85
55
Totalc 9,846
10,214 
10,768 
11,920
4,615 
12,538
12,280 
13,947
12,544
Source: NIST, budget requests for FY2008-FY2012, available at http://www.nist.gov/public_affairs/budget/
index.cfm; DOE, budget requests for FY2008-FY2012, available at http://www.cfo.doe.gov/crorgcf30.htm; NSF, 
budget requests for FY2008-FY2012 available at http://www.nsf.gov/about/budget; P.L. 112-55; and H.Rept. 112-
284. TBD = to be determined. FY2011 data from P.L. 112-10 and H.Rept. 112-118; and FY2012 data from P.L. 
112-74 and H.Rept. 112-331. 
a.  Includes $54.0 million transferred to the U.S. Coast Guard for icebreaking services (per P.L. 112-10). 
b.  NIST core research is performed under its scientific and technical research and services (STRS) account.  
c.  Totals may differ from the sum of the components due to rounding.  
Figure 1. Doubling of Research Funding for Targeted Accounts:  
Appropriations and Authorizations Versus Selected Rates 
200%
D O U B L E
175%
g
in
unding)
ubl
o
2006 F
 D
Y
 F
ard
150%
w
 of
ling
America COMPETES 
Am erica COMPETES Act
Reauthorization Act
ess To
oub
 D
 =
Obama 
Obam a OMB 
rogr
P
%
Projections 
125%
(200
Bush Requests
Actual Appropriations
100%
FY2006
FY2007
FY2008
FY2009
FY2010
FY2011
FY2012
FY2013
FY2014
FY2015
FY2016
 
Source: Prepared by the Congressional Research Service (CRS) using agency budget justifications for fiscal years 
2008, 2009, 2010, 2011, and 2012; the President’s FY2012 budget request; P.L. 112-10; and agency authorization 
levels from the America COMPETES Act (P.L. 110-69) and the America COMPETES Reauthorization Act of 2010 
(P.L. 111-358). FY2011 data from P.L. 112-10 and H.Rept. 112-118; and FY2012 data from P.L. 112-74 and H.Rept. 
112-331. 
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Federal Research and Development Funding: FY2012 
 
Notes: The 7-year doubling pace represents annual increases of 10.4%, the 10-year doubling pace represents annual 
increases of 7.2%, the 11-year doubling pace represents annual increases of 6.5%, and the 15-year doubling represents 
annual increases of 4.7%. Through compounding, these rates achieve the doubling of funding in the specified time 
period. The lines connecting aggregate appropriations for the targeted accounts are for illustration purposes only. 
With respect to “Actual Appropriations,” aggregate data for FY2006-FY2011 is based on regular appropriations 
(funding provided under the American Recovery and Reinvestment Act of 2009 (P.L. 111-5) is not included). America 
COMPETES Act figures are based on aggregate funding for the target accounts as authorized by the act. America 
COMPETES Reauthorization Act of 2010 figures for FY2011-FY2013 are based on aggregate funding for the target 
accounts as authorized by the act.  
National Nanotechnology Initiative 
President Obama’s FY2012 budget request provides funding for three multiagency R&D 
initiatives. Funding for the National Nanotechnology Initiative (NNI) is requested in the amount 
of $2.130 billion for FY2012, $217 million (11.3%) above the FY2010 actual level of $1.931 
billion. The overall increase in the FY2012 NNI funding request is due, in part, to funding for 
what the Administration refers to as “signature initiatives”: Nanoelectronics for 2020 and 
Beyond; Sustainable Manufacturing: Creating the Industries of the Future; and Nanotechnology 
for Solar Energy Collection and Conversion. Under the Administration’s FY2012 request, 
nanotechnology funding would increase at the Department of Energy by $237 million (63.3%) 
over its FY2010 funding level, at the Department of Health and Human Services by $24 million 
(5.0%), at NASA by $13 million (64.0%), and at the National Science Foundation by $11 million 
(2.5%). Funding for FY2012 would fall for the Department of Defense by $71 million (-16.2%), 
the Department of Homeland Security by $12 million (-53.4%), and the Department of 
Agriculture by $4 million (-18.2%). Nanotechnology funding for other NNI agencies would 
remain flat in FY2012.25 
Networking and Information Technology Research and 
Development Program 
President Obama has requested $3.868 billion in FY2012 funding for the Networking and 
Information Technology Research and Development (NITRD) program, $74 million (2.0%) 
above the FY2010 actual level. The NITRD request includes reductions of $261 million (-19.9%) 
in DOD funding and $21 million (-3.1%) for HHS funding, and increases of $153 million 
(13.8%) for NSF, $108 million (24.1%) for DOE, $53 million (49.3%) for DOC, $35 million 
(69.7%) for DHS, and $9 million for NASA (11.0%).26 
U.S. Global Change Research Program  
President Obama has proposed $2.633 billion for the U.S. Global Change Research Program 
(USGCRP) in FY2012, $446 million (20.4%) above the FY2010 actual level of $2.187 billion. 
Four agencies would receive the bulk of the FY2010 USGCRP funding increase: NASA (up $215 
                                                 
25National Science and Technology Council, The White House, The National Nanotechnology Initiative: Research and 
Development Leading to a Revolution in Technology and Industry, Supplement to the President’s FY2012 Budget, 
February 2011. For additional information on the NNI, see CRS Report RL34401, The National Nanotechnology 
Initiative: Overview, Reauthorization, and Appropriations Issues, by John F. Sargent Jr. 
26 Executive Office of the President, Office of Science and Technology Policy, Innovation, Education, and 
Infrastructure, Table 2, February 14, 2011. 
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Federal Research and Development Funding: FY2012 
 
million, 19.1%); NSF (up $106 million, 33.0%); DOC, including the National Oceanic and 
Atmospheric Administration and NIST (up $56 million, 15.4%); and DOE (up $54 million, 
31.5%).27 
FY2012 Appropriations Status 
On December 17, 2011, Congress completed action on the FY2012 regular appropriations bills 
with passage of H.R. 2055, the Consolidated Appropriations Act, 2012, which was signed into 
law (P.L. 112-74) by President Obama on December 23, 2011. P.L. 112-74 includes the nine 
regular appropriations bills that had yet to be enacted: Department of Defense Appropriations Act, 
2012 (as Division A); the Energy and Water Development Appropriations Act, 2012 (as Division 
B); the Financial Services and General Government Appropriations Act, 2012 (as Division C); the 
Department of Homeland Security Appropriations Act, 2012 (as Division D); the Department of 
the Interior, Environment, and Related Agencies Appropriations Act, 2012 (as Division E); the 
Departments of Labor, Health and Human Services, Education, and Related Agencies 
Appropriations Act, 2012 (as Division F); the Legislative Branch Appropriations Act, 2012 (as 
Division G); the Military Construction and Veterans Affairs and Related Agencies Appropriations 
Act, 2012 (as Division H); and the Department of State, Foreign Operations, and Related 
Programs Appropriations Act, 2012 (as Division I). 
Earlier, on November 17, 2011, Congress completed action on the Consolidated and Further 
Continuing Appropriations Act, 2012 (P.L. 112-55), which combined into a single measure three 
regular appropriations bills: the Agriculture, Rural Development, Food and Drug Administration, 
and Related Agencies Act, as H.R. 2112, Division A; Commerce, Justice, State and Related 
Agencies Act, as H.R. 2112, Division B; and Transportation, Housing and Urban Development, 
and Related Agencies Act, as H.R. 2112, Division C.28 President Obama signed the bill into law 
two days later. Division D of the act amended an earlier continuing appropriations act (P.L. 112-
36) providing funding through December 16, 2011, for all agencies covered under the other nine 
appropriations bills at 1.503% below the FY2011-enacted levels, or until enactment of an 
appropriation for any project or activity provided for in the act or enactment of the applicable 
appropriations act for fiscal year 2012 without any provision for such project or activity. 
Previously, Congress passed and the President signed two bills, both titled the Continuing 
Appropriations Act, 2012, that provided continuing appropriations for all agencies for FY2012. 
P.L. 112-33 extended agency funding through October 4, 2011; P.L. 112-36 extended funding 
through November 18, 2011.29 
The remainder of this report provides a more in-depth analysis of R&D in 12 federal departments 
and agencies that, in aggregate, receive more than 98% of federal R&D funding. Annual 
                                                 
27 Executive Office of the President, Office of Science and Technology Policy, Innovation, Education, and 
Infrastructure, Table 2, February 14, 2011. For additional information on the USGCRP, see CRS Report RL33817, 
Climate Change: Federal Program Funding and Tax Incentives, by Jane A. Leggett. 
28 The Consolidated and Further Continuing Appropriations Act, 2012 was referred to as a “minibus,” as it included 
only a few of the regular appropriations bills, whereas an “omnibus” bill includes many or all such bills. For example, 
the Omnibus Appropriations Act, 2009 (P.L. 111-8), included 9 of the 12 regular appropriations bills. 
29 For further information see CRS Report RL30343, Continuing Resolutions: Latest Action and Brief Overview of 
Recent Practices, by Sandy Streeter. 
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Federal Research and Development Funding: FY2012 
 
appropriations for these agencies are provided through 8 of the 12 regular appropriations bills. 
For each agency covered in this report, Table 5 shows the corresponding regular appropriations 
bill that provides funding for the agency, including its R&D activities.  
In addition to this report, CRS produces individual reports on each of the appropriations bills. 
These reports can be accessed via the CRS website at http://crs.gov/Pages/clis.aspx?cliid=73. 
Also, the status of each appropriations bills is or will be available on the CRS webpage, FY2012 
Status Table of Appropriations, available at http://www.crs.gov/Pages/appover.aspx. This report 
will be updated as relevant appropriations bills are passed by the House or the Senate.  
Table 5. Alignment of Agency R&D Funding and Regular Appropriations Bills 
Department/Agency 
Regular Appropriations Bill 
Department of Defense 
Department of Defense Appropriations Act 
Department of Homeland Security 
Department of Homeland Security Appropriations Act 
National Institutes of Health 
Departments of Labor, Health and Human Services, and 
Education, and Related Agencies Appropriations Act 
Department of Energy 
Energy and Water Development and Related Agencies 
Appropriations Act 
National Science Foundation 
Commerce, Justice, Science, and Related Agencies 
Appropriations Act 
Department of Commerce 
Commerce, Justice, Science, and Related Agencies 
   National Institute of Standards and Technology 
Appropriations Act 
   National Oceanic and Atmospheric Administration 
National Aeronautics and Space Administration 
Commerce, Justice, Science, and Related Agencies 
Appropriations Act 
Department of Agriculture 
Agriculture, Rural Development, Food and Drug 
Administration, and Related Agencies Appropriations Act 
Department of the Interior 
Department of the Interior, Environment, and Related 
Agencies Appropriations Act 
Environmental Protection Agency 
Department of the Interior, Environment, and Related 
Agencies Appropriations Act 
Department of Transportation 
Transportation, Housing and Urban Development, and 
Related Agencies Appropriations Act 
Source: CRS website, FY2011 Status Table of Appropriations, available at http://www.crs.gov/Pages/
appover.aspx. 
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Federal Research and Development Funding: FY2012 
 
Department of Defense30 
Congress supports research and development in the Department of Defense (DOD) primarily 
through its Research, Development, Test, and Evaluation (RDT&E) appropriation. The 
appropriation supports the development of the nation’s future military hardware and software and 
the technology base upon which those products rely. 
Nearly all of what DOD spends on RDT&E is appropriated in Title IV of the defense 
appropriation bill. (See Table 6.) However, RDT&E funds are also appropriated in other parts of 
the bill. For example, RDT&E funds are appropriated as part of the Defense Health Program, the 
Chemical Agents and Munitions Destruction Program, and the National Defense Sealift Fund. 
The Defense Health Program supports the delivery of health care to DOD personnel and their 
families. Program funds are requested through the Operations and Maintenance appropriation. 
The program’s RDT&E funds support congressionally directed research in such areas as breast, 
prostate, and ovarian cancer and other medical conditions. Congress appropriates funds for this 
program in Title VI (Other Department of Defense Programs) of the defense appropriations bill. 
The Chemical Agents and Munitions Destruction Program supports activities to destroy the U.S. 
inventory of lethal chemical agents and munitions to avoid future risks and costs associated with 
storage. Funds for this program have been requested through the Procurement appropriation. 
Congress appropriates funds for this program also in Title VI. The National Defense Sealift Fund 
supports the procurement, operation and maintenance, and research and development of the 
nation’s naval reserve fleet and supports a U.S. flagged merchant fleet that can serve in time of 
need. Requests for this fund are made as part of the Navy’s Procurement appropriation. Congress 
appropriates funds for this program in Title V (Revolving and Management Funds) of the defense 
appropriations bill.  
The Joint Improvised Explosive Device Defeat Fund (JIEDDF) also contains RDT&E monies. 
However, the fund does not contain an RDT&E line item as do the three programs mentioned 
above. The Joint Improvised Explosive Device Defeat Office, which now administers the fund, 
tracks (but does not report) the amount of funding allocated to RDT&E. The JIEDDF funding is 
not included in the table below. 
RDT&E funds also have been requested and appropriated as part of DOD’s separate funding to 
support efforts in what the Bush Administration had termed the Global War on Terror (GWOT), 
and what the Obama Administration refers to as Overseas Contingency Operations (OCO). 
Typically, the RDT&E funds appropriated for GWOT/OCO activities go to specified Program 
Elements (PEs) in Title IV. However, they are requested and accounted for separately. The Bush 
Administration requested these funds in separate GWOT emergency supplemental requests. The 
Obama Administration, while continuing to identify these funds uniquely as OCO requests, has 
included these funds as part of the regular budget, not in emergency supplementals. However, the 
Obama Administration will ask for additional OCO funds in supplemental requests, if the initial 
OCO funding is not enough to get through the fiscal year. 
                                                 
30 This section was written by John Moteff, Specialist in Science and Technology Policy, CRS Resources, Science, and 
Industry Division. 
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Federal Research and Development Funding: FY2012 
 
In addition, GWOT/OCO-related requests/appropriations often include money for a number of 
transfer funds. These have included in the past the Iraqi Freedom Fund (IFF), the Iraqi Security 
Forces Fund (which was not requested in FY2012), the Afghanistan Security Forces Fund, the 
Mine Resistant and Ambush Protected Vehicle Fund (MRAPVF), and the Pakistan 
Counterinsurgency Capability Fund (transferred to the State Department in FY2012). Congress 
typically makes a single appropriation into each of these funds, and authorizes the Secretary to 
make transfers to other accounts, including RDT&E, at his discretion. In the Consolidated 
Appropriations Act, 2012, Congress established a new Military Intelligence Program Transfer 
Fund, granting the Secretary similar authority. 
For FY2012, the Obama Administration requested $75.325 billion for DOD’s baseline Title IV 
RDT&E and another $397 million in OCO RDT&E. The FY2012 request is $5.330 billion 
(nearly 7%) below the actual total obligational authority available in FY2010, but only $90 
million below the total Title IV and OCO RDT&E provided for in FY2011. In addition to the 
$75.325 billion baseline request, the Administration requested $100 million as DOD’s share of 
the proposed Wireless Innovation Fund. This fund (approximately $3 billion that would be 
distributed through various departments) is part of the President’s initiative to expand coverage 
and usage of the nation’s wireless networks and to encourage innovation in wireless devices. The 
Defense Advanced Research Projects Agency (DARPA) would manage the $100 million for 
DOD, if the fund is established. 
The House voted to appropriate $72.993 billion for Title IV RDT&E. This included floor action 
that reduced the Defensewide RDT&E account $16 million below what the House Appropriation 
Committee recommended, offsetting an increase approved for peer-reviewed prostate cancer 
research in the Defense Health Program. The House appropriation was $2.432 billion below the 
Administration’s request. Major program decreases included reductions to the Army’s 
Patriot/MEADS ($149 million) and Manned Ground Vehicles ($116 million) programs, the Air 
Force’s National Polar-Orbiting Operational Environment Satellite ($220 million), Rocket System 
Launch ($125 million) programs and the Missile Defense Agency’s Prompt Strike Capability 
($100 million), and the Office of the Secretary’s Precision Tracking Space System ($161 million). 
Major increases were made to the Air Force’s Next Generation Bomber ($100 million) and the 
Office of the Secretary’s U.S.-Israeli Cooperative R&D ($130 million). Also, DARPA’s budget 
request was reduced by $100 million, the Committee citing efficiency gains in programming. The 
House made no mention of DOD’s involvement in the Wireless Innovation Fund. 
The Senate Appropriations Committee recommended $71.034 billion for Title IV RDT&E, nearly 
$2 billion less than what the House provided and over $4 billion less than what the 
Administration requested. The committee recommended more than $1 billion less for Army 
RDT&E than either the Administration requested or the House approved. Major program 
decreases included the Army’s Warfighter Information Network ($115 million), which was not cut 
by the House, the Manned Ground Vehicle ($644 million), and Logistics and Engineering 
Equipment ($160 million), cutting these last two more than the House did. Cuts were also made 
to the Air Force’s National Polar-Orbiting Operational Environment Satellite ($295 million), also 
cut by the House, and the Next Generation Refueling Aircraft ($135 million), which was not cut 
by the House. The Senate committee also cut the Chemical Biological Defense Engineering and 
Manufacturing program ($186 million), which the House fully funded. Major program increases 
included funds for a new Air Force Weather Satellite Follow-on program ($250 million) to 
continue technology development associated with the National Polar-Orbiting Operational 
Environment Satellite, funds for the Office of the Secretary to support the Defense Rapid 
Innovation Fund ($200 million) and the Office of the Secretary’s U.S.-Israeli Cooperative R&D 
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Federal Research and Development Funding: FY2012 
 
($130 million). Aside from cutting where the House did not, the Senate committee also did not go 
along with a number of House cuts, providing all the funds requested for the Army’s 
Patriot/MEADS, the Air Force’s Rocket System Launch, the Office of the Secretary’s Precision 
Tracking Space System, and the Missile Defense Agency’s Prompt Strike Capability. The Senate 
also did not go along with the general reduction to DARPA’s program, nor did it increase funding 
for the Air Force’s Next Generation Bomber. 
In the Consolidated Appropriations Act, 2012, Congress approved $72.431 for Title IV RDT&E, 
roughly splitting the difference between the House and Senate. Reductions made to the Logistics 
and Engineering Equipment ($77 million), the Prompt Strike ($25 million), the Precision 
Tracking Space System ($80 million), and the Chemical Biological Defense Engineering and 
Manufacturing ($84 million) programs were roughly half those sought by either the House or 
Senate. The Manned Ground Vehicle program was reduced by $435 million. The National Polar-
Orbiting Operational Environment Satellite program was terminated. The Rocket Launch System 
and the Next Generation Refueling Aircraft, which were cut respectively by the House and 
Senate, were fully funded. Congress also reduced DARPA’s RDT&E request by $166 million. 
Among the programs for which Congress approved increases were the U.S.-Israeli Cooperative 
R&D ($129 million), the Next Generation Bomber ($100 million), the Rapid Innovation Program 
($200 million), and the Weather Satellite ($125 million).   
For FY2012, the Administration requested an additional $664 million in RDT&E through the 
Defense Health Program, $407 million in RDT&E through the Chemical Agents and Munitions 
Destruction program, and $48 million in RDT&E through the National Defense Sealift Fund. To 
support overseas contingencies, the Administration requested $397 million in OCO-related 
RDT&E. The Administration also requested $2 million in RDT&E for DOD’s Office of the 
Inspector General. 
The House voted to increase RDT&E in the Defense Health Program to $1.217 billion. This 
included an additional $30 million added on the House floor. The House approved the amount 
requested for the Chemical Agents and Munitions Destruction program and the National Defense 
Sealift Fund. The House appropriated $5 million for RDT&E in the Inspector General’s Office. 
The Senate Appropriations Committee recommended $1.018 billion for RDT&E in the Defense 
Health Program and the amount requested for RDT&E in the Chemical Agents and Munitions 
Destruction Program. The Consolidated Appropriations Act, 2012 provided $1.267 billion in 
Defense Health Program RDT&E; $407 million, as requested, for the Chemical Agents and 
Munitions Destruction Program; and $5 million for RDT&E by the Inspector General’s Office.  
For OCO-related RDT&E, the House appropriated $437 million, supporting much of the 
Administration’s request. It provided $10 million less than requested for the Air Force’s 
Unmanned Endurance UAV program, but provided $50 million in funding the Air Force’s 
Intelligence, Surveillance, and Reconnaissance Innovation program. The Senate Appropriations 
Committee recommended $582 million for OCO-related RDT&E, nearly $200 million more than 
requested. $105 million of that increase was a result of transferring the Navy’s MQ-4 UAV Title 
IV funding to the OCO funding. In the Consolidated Appropriations Act, 2012, Congress 
appropriated $526 million for OCO-related RDT&E. This included a $59 million transfer from 
JIEDDO to the Air Force for the continued development of an endurance unmanned aerial vehicle 
and a $50 million increase for Intelligence, Surveillance, and Reconnaissance innovations by the 
Air Force.  
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RDT&E funding can be broken out in different ways. Each of the military departments request 
and receive their own RDT&E funding. So, too, do various DOD agencies (e.g., the Missile 
Defense Agency and the Defense Advanced Research Projects Agency), collectively aggregated 
within the Defensewide account. RDT&E funding also can be characterized by budget activity 
(i.e., the type of RDT&E supported). Those budget activities designated as 6.1, 6.2, and 6.3 (basic 
research, applied research, and advanced technology development, respectively) constitute what 
is called DOD’s Science and Technology Program (S&T) and represent the more research-
oriented part of the RDT&E program. Budget activities 6.4 and 6.5 focus on the development of 
specific weapon systems or components (e.g., the Joint Strike Fighter or missile defense systems), 
for which an operational need has been determined and an acquisition program established. 
Budget activity 6.6 provides management support, including support for test and evaluation 
facilities. Budget activity 6.7 supports system improvements in existing operational systems.  
Congressional policymakers are particularly interested in S&T funding since these funds support 
the development of new technologies and the underlying science. Ensuring adequate support for 
S&T activities is seen by some in the defense community as imperative to maintaining U.S. 
military superiority. The knowledge generated at this stage of development can also contribute to 
advances in commercial technologies. 
The FY2012 Title IV baseline S&T funding request was $12.246 billion (not including the $100 
million for the Wireless Innovation Fund), about $1.060 billion (8%) less than the total 
obligational authority available for Title IV baseline S&T in FY2010, but $113 million above that 
available in FY2011. Given the unspecified reductions to DARPA and the Defensewide account 
in general, it is not possible to determine how much the House actions supported S&T. However, 
without these reductions, the House Appropriations Committee had recommended $12.180 billion 
for S&T, less than the Administration’s request. The Senate Appropriations Committee 
recommended $12.193 billion for S&T. The Consolidated Appropriations Act, 2012 provided 
$12.438 billion for S&T. 
Within the S&T program, basic research (6.1) receives special attention, particularly by the 
nation’s universities. DOD is not a large supporter of basic research, when compared to NIH or 
NSF. However, over half of DOD’s basic research budget is spent at universities and represents 
the major contribution of funds in some areas of science and technology (such as electrical 
engineering and material science). The FY2012 request for basic research ($2.078 billion) is 
roughly $263 million (14%) more than what was available for Title IV basic research in FY2010. 
The House appropriated $2.098 billion, a net increase of $20 million above the request, much of 
which went to increases for university research. However, the House appropriated $15 million 
less than requested for the National Defense Education Program. The Senate Appropriations 
Committee recommended $2.081 billion for basic research. The Consolidated Appropriations Act, 
2012 provided $2.116 billion for basic research. This included an increase above the requested 
levels for the following: $20 million for Army University and Industry Research Centers at 
Historically Black Colleges, $20 million for Navy competitive university research and $8 million 
for Navy nanotechnology research, and $12 million for Air Force research in cybersecurity. 
Congress also appropriated less than requested for the National Defense Education Program ($15 
million) and for Basic Research Initiatives ($7 million) in the Office of the Secretary.  
 
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Table 6. Department of Defense RDT&E 
(in millions of dollars) 
FY2012 
FY2012  
FY2012 
FY2012 
 FY20111 
Request 
House 
Senate 
Enacted 
Base + 
OCO 
Budget Account 
Enact’d 
Base OCO  Base OCO  Base OCO  Base OCO 
Army 
9,854 9,684 
9 9,381 
9 8,311 
19 8,755a 19 
Navy 
17,841 17,956 
54 17,799 
54 17,407 
158 17,754 
54 
Air 
Force 
27,001 
27,738 142 
26,313 182 
26,008 208 
26,536 260 
Defensewide 21,020 
19,856b 192 
19,309c 192 
19,117 197 
19,194 194 
Dir. Test & Eval. 
195 
191 
 
191 
 
191 
 
191 
 
Total Title IV - By 
 
75,912 
75,425 397 
72,993 437 
71,034 582 
72,431 526 
Accountd 
Budget Activity 
 
 
 
 
 
 
 
 
 
6.1 Basic Research 
1,947 
2,078 
 
2,098e  
2,081  
2,116  
6.2 Applied Research 
4,497 
4,687 
 
4,657e  
4,734  
4,748  
6.3 Advanced Dev. 
5,669 
5,581 
 
5,425e  
5,378  
5,573  
6.4 Advanced Component 
14,443 13,727 
2 13,434e 2 
13,693f 12 
13,499g 12 
Dev. and Prototypes 
6.5 Systems Dev. and 
14,578 15,664 
11 14,770e 11 
13,029f 11 
13,834g 11 
Demo 
6.6 Management Supporth 4,569 
4,175 
18 
4,146e 18 
4,357f 18 
4,357g 18 
6.7 Op. Systems Dev.i  
30,209 
29,512 
366 
28,580e 406 
27,759f 542 
28,293g 486 
Total Title IV—by 
75,912 75,425 
397 
 
437 71,034 
582 72,421j 526 
Budget Activityd 
73,109e 
Title V—Revolving and 
 
 
 
 
 
 
 
 
 
Management Funds 
National Defense Sealift 
28 
48  
48  
48  
48  
Fund 
Title VI—Other 
 
 
 
 
 
 
 
 
 
Defense Programs 
Office 
of 
Inspector 
General 
 2  5  5  5  
Defense Health Program 
1,176 
664 
 
1,217k  
1,018  
1,267  
Chemical Agents and 
393 407 
 
 
   
407  
407  
Munitions Destruction 
407 
Grand Totald 77,509 
76,546 
397 
74,671l 437 
72,512 582 
74,148 526 
Source: CRS, adapted from the Department of Defense Budget, Fiscal Year 2012, RDT&E Programs (R-1), 
February 2011; H.R. 2219; and H.Rept. 112-10; S.Rept. 112-77. 
a.  Includes an additional $10 million added to the Army’s Title IV account per Section 8114, Division A of the 
Consolidated Appropriations Act, 2012, with which the Secretary of the Army may conduct research on 
alternative energy resources for deployed forces.  
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Federal Research and Development Funding: FY2012 
 
b.  Includes the $100 million for Defense Advanced Research Project Agenecy’s (DARPA’s) share of the 
Wireless Innovation Fund.  
c.  Includes $16 million reduction voted on the House floor which offset an increase in peer-reviewed prostate 
cancer research in the Defense Health Program, and the $100 million general reduction to DARPA’s 
RDT&E funding.   
d.  Total may differ from sum of components due to rounding.  
e.  Does not include the $16 million reduction in Defensewide account voted on the House floor offsetting an 
increase in peer-reviewed prostate cancer research in the Defense Health Program, nor the $100 mil ion 
general reduction in the DARPA RDT&E. Therefore, the “Total Title IV by Budget Activity” figure is larger 
than the “Total Title IV by Account” figure.   
f. 
Does not include $50 million transferred from the Army’s 6.4, 6.5,and 6.7 accounts and another $50 million 
from the Air Force’s 6.4, 6.5, and 6.7 accounts to their respective 6.6 accounts to support test facilities, per 
Section 8072 of the Senate version of H.R. 2219 as reported by the Senate Appropriations Committee 
(S.Rept. 112-77).  
g.  Does not include $50 million from the Army’s 6.4, 6.5, and 6.7 accounts and $34 million from the Air 
Force’s 6.4, 6.5 and 6..7 accounts transferred to their respective 6.6 accounts to support test facilities, per 
Section 8074, Division A of the Consolidated Appropriations Act, 2012.  
h.  Includes funding for the Director of Test and Evaluation.  
i. 
Includes funding for classified programs.  
j. 
Does not include the $10 million added to the Army’s account by Section 8114, Division A of the 
Consolidated Appropriations Act, 2012 (see footnote a above).  
k.  Includes $30 million increase in Defense Health Program RDT&E approved on the House floor.  
l. 
The “Grand Total” figure uses the “Total Title IV – by Account” figure.  
Department of Homeland Security31 
The Department of Homeland Security (DHS) requested $1.528 billion for R&D and related 
programs in FY2012, a 36% increase from FY2011. This total included $1.176 billion for the 
Directorate of Science and Technology (S&T), $332 million for the Domestic Nuclear Detection 
Office (DNDO), and $20 million for Research, Development, Test, and Evaluation (RDT&E) in 
the U.S. Coast Guard. The bill passed by the House would have provided $889 million, including 
$539 million for S&T, $337 million for DNDO, and $13 million for Coast Guard RDT&E. The 
bill reported by the Senate Committee on Appropriations would have provided $1.076 billion, 
including $780 million for S&T, $268 million for DNDO, and $28 million for Coast Guard 
RDT&E. The final appropriation was $984 million, including $668 million for S&T, $289 million 
for DNDO, and $28 million for Coast Guard RDT&E. (See Table 7.) 
The S&T Directorate is the primary DHS R&D organization.32 Headed by the Under Secretary 
for Science and Technology, it performs R&D in several laboratories of its own and funds R&D 
performed by the DOE national laboratories, industry, universities, and others. The 
Administration requested $1.176 billion for the S&T Directorate for FY2012. This was 53% more 
than the net FY2011 appropriation of $767 million.33 The request for Laboratory Facilities 
                                                 
31 This section was written by Daniel Morgan, Specialist in Science and Technology Policy, CRS Resources, Science, 
and Industry Division. 
32 For more information, see CRS Report RL34356, The DHS Directorate of Science and Technology: Key Issues for 
Congress, by Dana A. Shea and Daniel Morgan. 
33 The Department of Defense and Full-Year Continuing Appropriations Act, 2011 (P.L. 112-10) rescinded $61 million 
(continued...) 
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Federal Research and Development Funding: FY2012 
 
included $150 million to support the start of construction at the National Bio and Agro-Defense 
Facility (NBAF). About $109 million of the request for Research, Development, and Innovation 
was for radiological and nuclear R&D activities currently conducted in DNDO. 
The House bill provided $539 million for S&T. For Research, Development, and Innovation, it 
provided $106 million, just 16% of the request. In Laboratory Facilities, it provided $75 million, 
or half the request, for NBAF construction. It rejected the proposed transfer of radiological and 
nuclear R&D activities from DNDO. The committee report stated that “S&T must demonstrate 
how its R&D efforts are timely, with results relatively well-defined, and above all, make 
investment decisions based on clear and sensible priorities.” It stated the committee’s expectation 
that “the proposed funding levels will force S&T to make more focused, high-return investment 
decisions.” 
The Senate-reported bill provided $780 million for S&T.34 For Research, Development, and 
Innovation, it provided $440 million. The bill approved the proposed transfer of activities from 
DNDO, but it provided no funding for NBAF construction. The committee report described the 
amount requested for NBAF as “not a useable construction segment” and directed S&T to 
provide an updated cost schedule for the project. 
The final appropriation for S&T was $668 million. This amount included $266 million for 
Research, Development, and Innovation and $50 million for NBAF construction. The proposed 
transfer from DNDO was denied. 
In late 2010, the S&T Directorate announced a reorganization and released a new strategic plan. 
The reorganization reduced the number of direct reports to the Under Secretary and was 
accompanied by a change in budget structure, with most of the previous budget lines combined 
into two new categories: Research, Development, and Innovation (RDI) and Acquisition and 
Operations Support. According to DHS, the new strategy and organization will result in more 
robust partnerships with other DHS components, a smaller number of larger projects, and more 
emphasis on transitioning technology into the field rather than long-term research. The House and 
Senate committee reports both objected to the new budget structure. The House report described 
the RDI budget category as “all-encompassing ... too large and vague.” The Senate report stated 
that the new structure “reduces transparency and accountability.” The conference report stated 
that the new RDI category “will enable S&T to more quickly shift resources ... between research 
activities” and “should ... partially offset the impact of an overall funding reduction,” but it 
directed S&T to submit a quarterly “detailed breakout” of RDI projects “for accountability and 
visibility.” 
The construction of NBAF will likely result in increased congressional oversight over the next 
several years. For construction of NBAF and decommissioning of the Plum Island Animal 
Disease Center (PIADC), which NBAF is intended to replace, the FY2012 budget justification 
projected a need for $691 million in total appropriations between FY2012 and FY2017. In the 
appropriations acts for FY2009 through FY2011, Congress authorized DHS to use receipts from 
                                                                  
(...continued) 
in unobligated S&T Directorate funds from prior fiscal years. Not including this rescission, the FY2011 appropriation 
was $828 million, and the increase requested for FY2012 was 42%. 
34 The bill rescinded $20 million from prior-year unobligated balances. Without this rescission, the Senate-reported bill 
provided $800 million for S&T. 
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Federal Research and Development Funding: FY2012 
 
the sale of Plum Island to offset NBAF construction and PIADC decommissioning costs.35 The 
House-passed, Senate-reported, and enacted bills for FY2012 all continued this authorization. 
According to DHS, however, the likely value of such receipts “has been found to be considerably 
overestimated.”36 
The Domestic Nuclear Detection Office is the primary DHS organization for combating the threat 
of nuclear attack, responsible for all DHS nuclear detection research, development, testing, 
evaluation, acquisition, and operational support. The Administration requested $332 million for 
DNDO for FY2012, approximately the same as the FY2011 appropriation of $331 million. The 
request for Research, Development, and Operations was $58 million less than the FY2011 
appropriation; it included no funds for Transformational R&D, which the Administration 
proposed to transfer to the S&T Directorate. The request for Systems Acquisition was $84 
million, versus $30 million in FY2011. Within Systems Acquisition, the request included $37 
million for radiation portal monitors and $27 million for the Securing the Cities program, which 
was previously funded at congressional direction and limited to the New York region. The request 
proposed expanding Securing the Cities to an additional city in FY2012. 
The House bill provided $337 million for DNDO. It rejected the transfer of Transformational 
R&D to the S&T Directorate, but provided only $45 million for that program, versus $96 million 
in FY2011. The bill provided $20 million for acquisition of radiation portal monitors. It provided 
$22 million for Securing the Cities, of which only $2 million was for expansion to a new city. 
The Senate-reported bill provided $268 million for DNDO. It approved the proposed transfer of 
Transformational R&D. It provided $8 million for radiation portal monitors. Like the House bill, 
it provided $22 million for Securing the Cities, including $2 million for a new city. 
The enacted appropriation for DNDO was $289 million. This included $40 million for 
Transformational R&D, whose transfer to S&T was denied. The radiation portal monitors 
program received $7 million. Like the House and Senate bills, the conference report included $22 
million for Securing the Cities, including $2 million for a new city. 
Congressional attention has focused in recent years on the testing and analysis DNDO has 
conducted to support its planned purchase and deployment of Advanced Spectroscopic Portals 
(ASPs), a type of next-generation radiation portal monitor.37 Each homeland security 
appropriations act from FY2007 through FY2011 included a requirement for secretarial 
certification before full-scale ASP procurement. The House-passed and Senate-reported bills for 
FY2012 included a similar requirement. In February 2010, DHS decided that it would no longer 
pursue the use of ASPs for primary screening, although it will continue developing and testing 
them for use in secondary screening.38 Although the FY2012 request included funds to purchase 
                                                 
35 Department of Homeland Security Appropriations Act, 2009 (P.L. 110-329, Div. D, §540) and Department of 
Homeland Security Appropriations Act, 2010 (P.L. 111-83, §540). The FY2010 provision was continued for FY2011 
under the Department of Defense and Full-Year Continuing Appropriations Act, 2011 (P.L. 112-10). 
36 DHS FY2012 budget justification, p. S&T RDA&O 24. For more information on NBAF, see CRS Report RL34160, 
The National Bio- and Agro-Defense Facility: Issues for Congress, by Dana A. Shea, Jim Monke, and Frank Gottron. 
37 For more information, see CRS Report RL34750, The Advanced Spectroscopic Portal Program: Background and 
Issues for Congress, by Dana A. Shea, John D. Moteff, and Daniel Morgan. 
38 Letter from Dr. William K. Hagan, Acting Director, DNDO, to Senator Lieberman, February 24, 2010, 
http://hsgac.senate.gov/public/index.cfm?FuseAction=Files.View&FileStore_id=11f7d1f0-c4fe-4105-94e6-
bb4a0213f048. 
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and deploy 44 ASPs for secondary screening, the director of DNDO subsequently stated that 
DNDO will deploy 13 ASPs that it has already purchased but will “end the ASP program as 
originally conceived.”39 The House committee report expressed an expectation that DNDO will 
not deploy ASPs prior to certification, even for secondary screening, but noted that radiation 
portal monitor funding in the House-passed bill “is not restricted” to previous-generation systems. 
The Senate report stated that “the request to procure and deploy 44 [ASPs] is denied.” Noting the 
cancellation decision, the conference report omitted the previous requirement for ASP 
certification. It directed DHS to notify the appropriations committees if a successor program is 
initiated. 
The global nuclear detection architecture (GNDA) overseen by DNDO remains an issue of 
congressional interest.40 The Systems Engineering and Architecture activity includes a GNDA 
development program as well as programs to develop and assess GNDA activities in various 
mission areas. The Senate-reported bill directed DNDO to prepare and submit “a strategic plan of 
investments necessary to implement the Department of Homeland Security’s responsibilities 
under the domestic component of the global nuclear detection architecture.” It identified specific 
items that should be included in the required plan. The enacted bill included similar language. 
The mission of DNDO, as established by Congress in the SAFE Port Act (P.L. 109-347, Title V), 
includes serving as the primary federal entity “to further develop, acquire, and support the 
deployment of an enhanced domestic system” for detection of nuclear and radiological devices 
and material (6 U.S.C. 592). The same act eliminated any explicit mention of radiological and 
nuclear countermeasures from the statutory duties and responsibilities of the Under Secretary for 
S&T. Congress may consider whether the proposed transfer of DNDO’s research activities to the 
S&T Directorate is consistent with its intent in the SAFE Port Act. Congress may also choose to 
consider the acquisition portion of DNDO’s mission. Most of DNDO’s funding for Systems 
Acquisition was eliminated in FY2010, and that year’s budget stated that “funding requests for 
radiation detection equipment will now be sought by the end users that will operate them.”41 In 
contrast, the FY2012 request for Systems Acquisition included funding for ASPs that would be 
operated by Customs and Border Protection, as well as human-portable radiation detectors for the 
Coast Guard, Customs and Border Protection, and the Transportation Security Administration. 
The reasons for this apparent reversal of policy were not provided in the DNDO budget 
justification for either FY2011 or FY2012. 
                                                 
39 Warren M. Stern, Director, Domestic Nuclear Detection Office, Department of Homeland Security, testimony before 
the House Committee on Homeland Security, Subcommittee on Cybersecurity, Infrastructure Protection, and Security 
Technologies, July 26, 2011, http://homeland.house.gov/sites/homeland.house.gov/files/Testimony%20Stern.pdf. 
40 For more information, see CRS Report RL34574, The Global Nuclear Detection Architecture: Issues for Congress, 
by Dana A. Shea. 
41 Executive Office of the President, FY2010 Budget, Appendix, p. 560. 
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Table 7. Department of Homeland Security R&D and Related Programs 
(in millions of dollars) 
FY2011 
FY2012 
FY2012 
FY2012 
FY2012 
 
Enacted 
Request 
House 
Senate 
Enacted 
Directorate of Science and Technology 
$767 
$1,176 
$539 
$780 
$668 
Management and Administration 
140 
149 
141 
143 
135 
R&D, Acquisition, and Operations 
626 
1,027 
398 
637 
533 
  Research, Development, and Innovation 
n/a 
660 
107 
440 
266 
  Laboratory 
Facilities 
140 277 202 127 177 
  Acquisition and Operations Support 
n/a 
54 
54 
54 
54 
  University 
Programs 
40 37 37 37 37 
  Rescission of Prior-Year Unobligated Balances 
(61) 
— 
— 
(20) 
— 
Domestic Nuclear Detection Office 
331 
332 
337 
268 
289 
Management and Administration 
37 
41 
40 
37 
37 
Research, Development, and Operations 
264 
206 
245 
191 
215 
  Systems Engineering and Architecture 
33 
32 
30 
31 
30 
  Systems 
Development 
53 70 69 60 51 
  Transformational R&D 
96 
— 
45 
— 
40 
  Assessments 
38 43 40 40 38 
  Operations 
33 37 36 35 33 
  Forensics 
22 25 25 25 23 
  Rescission of Prior-Year Unobligated Balances 
(11) 
— 
— 
— 
— 
Systems Acquisition 
30 
84 
52 
40 
37 
  Radiation Portal Monitors Program 
— 
37 
20 
8 
7 
  Securing the Cities 
20 
27 
22 
22 
22 
  Human Portable Radiation Detection Systems 
10 
20 
10 
10 
8 
U.S. Coast Guard RDT&E 
25 
20 
13 
28 
28 
TOTAL 1,122 
1,528 
889 
1,076 
984 
Source: FY2011 from P.L. 112-10 and DHS FY2011expenditure plan. FY2012 request from DHS FY2012 budget 
justification, online at http://www.dhs.gov/xabout/budget/. FY2012 House from H.R. 2017 as passed by the House 
and H.Rept. 112-91. FY2012 Senate from H.R. 2017 as reported in the Senate and S.Rept. 112-74. FY2012 
enacted from P.L. 112-74 and H.Rept. 112-331. 
Notes: Totals may differ from the sum of their components due to rounding. Amounts shown as not available 
(n/a) were categorized differently in FY2011. 
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Federal Research and Development Funding: FY2012 
 
National Institutes of Health42 
The Consolidated Appropriations Act, 2012 (P.L. 112-74), enacted on December 23, 2011, 
provided FY2012 appropriations for NIH.43 The conference agreement on the act (H.Rept. 112-
331) gave NIH total discretionary funding of $30.8 billion, virtually unchanged from the FY2011 
level (see Table 8). However, the total does not yet reflect an across-the-board rescission of 
0.189%. The Obama Administration had requested discretionary budget authority of $31.8 billion 
for NIH, an increase of $1,062 million (3.3%) over FY2011.44 In late September 2011, bills from 
the Senate Appropriations Committee had recommended total discretionary funding of $30.6 
billion, slightly below the FY2011 level, while House bills would have provided $31.8 billion, 
equal to the request. Further details on congressional action follow the discussion of the request 
below. 
NIH’s organization consists of the Office of the NIH Director and 27 institutes and centers. The 
Office of the Director (OD) sets overall policy for NIH and coordinates the programs and 
activities of all NIH components, particularly in areas of research that involve multiple institutes. 
The institutes and centers (collectively called ICs) focus on particular diseases, areas of human 
health and development, or aspects of research support. Each IC plans and manages its own 
research programs in coordination with the Office of the Director. As shown in Table 8, Congress 
provides a separate appropriation to 24 of the 27 ICs, to OD, and to a Buildings and Facilities 
account. (The other three centers, not included in the table, are funded through the NIH 
Management Fund.) 
Funding for NIH comes primarily from the annual appropriations bill for the Departments of 
Labor, Health and Human Services, and Education, and Related Agencies (Labor/HHS), with an 
additional amount for Superfund-related activities from the appropriations bill for the Department 
of the Interior, Environment, and Related Agencies (Interior/Environment). Those two bills 
provide NIH’s discretionary budget authority. In addition, NIH receives mandatory funding of 
$150 million annually that is provided in the Public Health Service (PHS) Act for a special 
program on diabetes research, and also receives $8.2 million annually for the National Library of 
Medicine from a transfer within PHS. Each year from FY2002-FY2011 (but not in FY2012), 
Congress provided that a portion of NIH’s Labor/HHS appropriation be transferred to the Global 
Fund to Fight HIV/AIDS, Tuberculosis, and Malaria. The transfer, in recent years about $300 
million, has been part of the U.S. contribution to the Global Fund. The total funding available for 
NIH activities, taking account of add-ons and transfers, is the program level. Because the “NIH 
program level” cited in the Administration’s FY2012 budget documents does not reflect the 
Global Fund transfer, Table 8 shows the program level both before and after the transfer. 
Discussions in this section refer to the program level after the transfer. 
NIH and other HHS agencies and programs that are authorized under the PHS Act are subject to a 
budget tap called the PHS Program Evaluation Set-Aside. Section 241 of the PHS Act (42 U.S.C. 
§238j) authorizes the Secretary to use a portion of eligible appropriations to assess the 
                                                 
42 This section was written by Judith A. Johnson, Specialist in Biomedical Policy, CRS Domestic Social Policy 
Division. It was updated by Pamela W. Smith, Analyst in Biomedical Policy. 
43 For further information on NIH, see CRS Report R41705, The National Institutes of Health (NIH): Organization, 
Funding, and Congressional Issues, by Judith A. Johnson and Pamela W. Smith. 
44 FY2011 funding of $30.8 billion was provided in P.L. 112-10, The Department of Defense and Full-Year Continuing 
Appropriations Act, 2011. 
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effectiveness of federal health programs and to identify ways to improve them. The set-aside has 
the effect of redistributing appropriated funds for specific purposes among PHS and other HHS 
agencies. Section 205 of the FY2010 Labor/HHS appropriations act capped the set-aside at 2.5%, 
instead of the 2.4% maximum that had been in place for several years. The provision was carried 
forward for FY2011 under P.L. 112-10. The FY2012 budget proposed to increase the set-aside to 
3.2%. NIH, with the largest budget among the PHS agencies, becomes the largest “donor” of 
program evaluation funds, and is a relatively minor recipient. By convention, budget tables such 
as Table 8 do not subtract the amount of the evaluation tap, or of other taps within HHS, from the 
agencies’ appropriations. 
FY2012 President’s Budget Request. Under the FY2012 request, NIH said it would focus on 
implementing a new translational medicine program45 as well as emphasize three other broad 
scientific areas including advanced technologies, comparative effectiveness research, and support 
for young investigators. For the new program, NIH proposed to create the National Center for 
Advancing Translational Sciences (NCATS) to catalyze the development of new diagnostics and 
therapeutics. To do so, NIH planned to abolish the existing National Center for Research 
Resources (NCRR) and transfer its programs to various other parts of NIH, including transferring 
the Clinical and Translational Science Awards (CTSA) program to NCATS.46 The FY2012 request 
proposed $485 million for CTSA, a program which funds a national consortium of medical 
research institutions that work together to accelerate treatment development, engage communities 
in clinical research efforts, and train clinical and translational researchers. NCATS would also 
take charge of the Therapeutics for Rare and Neglected Diseases (TRND) program; the request 
planned to double support for TRND in FY2012 to $50 million. In FY2011, TRND was funded 
on an NIH-wide basis.  
Another proposal for NCATS was that it incorporate the new Cures Acceleration Network (CAN), 
which was authorized but not funded in the Patient Protection and Affordable Care Act (ACA, 
P.L. 111-148, P.L. 111-152, as amended). The purpose of CAN is to support the development of 
high need cures and facilitate their FDA review. The ACA authorized $500 million for FY2010 
and such sums as may be necessary for subsequent fiscal years for CAN. The law also specified 
that other funds appropriated under the Public Health Service Act may not be allocated to CAN. 
The NIH request proposed $100 million for CAN in FY2012. If CAN received funding, NIH 
would determine which medical products are “high need cures,” and then make awards to 
research entities or companies in order to accelerate the development of such high need cures.  
In addition to the new program, NIH emphasized three scientific areas in its plans for FY2012:  
1.  Technologies to Accelerate Discovery. NIH would continue to support 
development and application of advanced technologies (such as DNA 
sequencing, microarray technology, nanotechnology, new imaging modalities, 
and computational biology) to increase understanding of complex diseases, such 
                                                 
45 Translational medicine focuses on converting basic research discoveries into clinical applications that benefit 
patients. 
46 NIH, Justification of Estimates for Appropriations Committees, FY2012, Vol. I, Overview, p. ES-12, available at 
http://officeofbudget.od.nih.gov/pdfs/FY12/Tab%201%20Executive%20Summary.pdf. The tables in the justification 
documents (released February 14, 2011) did not reflect the proposed transfer of NCRR programs to NCATS and other 
components of NIH. In June 2011, NIH sent Congress detailed materials and revised tables reflecting the proposed 
realignment. The proposal was not submitted as an official budget amendment. 
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Federal Research and Development Funding: FY2012 
 
as cancer and Alzheimer’s disease, and enable development of more effective 
therapies.  
2.  Enhancing the Evidence Base for Health Care Decisions. NIH would use 
comparative effectiveness research methodologies to assist in developing 
individually-tailored treatments (personalized medicine) by testing candidate 
therapies in a group of Health Maintenance Organizations (HMOs) caring for 
more than 13 million patients. 
3.  New Investigators, New Ideas. NIH would emphasize two of its programs that 
support young scientists. The NIH Director’s New Innovator Award program 
provides first-time independent awards to outstanding investigators; the 
Administration requested $80 million to support these awards in FY2012. The 
second program, called the NIH Director’s Early Independence Program, 
supports talented junior scientists, allowing them to by-pass the traditional 
postdoctoral training period and move directly to an independent research career. 
NIH requested $8.4 million for this program in FY2012.  
Research Project Grants. Of the funds appropriated to NIH each year, more than 80% go out to 
the extramural research community in the form of grants, contracts, and other awards. The 
funding supports research performed by more than 325,000 scientists and technical personnel 
who work at more than 3,000 universities, hospitals, medical schools, and other research 
institutions around the country and abroad. The primary funding mechanism for support of the 
full range of investigator-initiated research is competitive, peer-reviewed research project grants 
(RPGs).  
In the FY2012 request, total funding for RPGs, at $16.9 billion, represented about 53% of NIH’s 
proposed budget. The request would support an estimated 36,852 RPG awards, 248 more grants 
than in FY2011.47 Within that total, 9,158 would be competing RPGs, 441 more than in FY2011. 
(“Competing” awards means new grants plus competing renewals of existing grants.) For 
noncompeting (continuation) RPGs, the FY2012 budget provided an inflation-adjustment 
increase of 1%. 
Other Funding Mechanisms. The FY2012 request included an increase over FY2011 for 
research training stipends for individuals supported by the Ruth L. Kirschstein National Research 
Service Awards program. The budget request would have raised funding for the program by $13 
million to $794 million, allowing NIH to support 16,831 full-time training positions, 29 more 
than in FY2011. Changes were also proposed in the request for other funding mechanisms within 
the NIH budget. Support for research centers would increase by $42 million (1.4%) to $3.036 
billion. R&D contracts were proposed for a $151 million (4.9%) increase to $3.245 billion 
(excluding the funding proposed for transfer to the Global HIV/AIDS Fund). The NIH intramural 
research program would have gained $94 million (2.9%) for a total of $3.382 billion. Research 
management and support had a requested increase of $19 million (1.3%) to a total of $1.538 
billion. Operations of the Office of the Director were proposed for a large increase of $118 
million (19%) for a total of $742 million. The appropriation for Buildings and Facilities would 
increase by almost $76 million (152%) to $126 million. 
                                                 
47 For this discussion of RPGs, as well as for the other funding mechanisms discussed in the next section, figures for 
FY2012 giving amounts of funding and number of awards come from the NIH budget justification cited in the previous 
footnote. Amounts and awards for FY2011 under the NIH Operating Plan come from a mechanism table obtained by 
CRS from the NIH Budget Office. 
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Federal Research and Development Funding: FY2012 
 
Also funded through the OD account is the NIH Common Fund, which supports research in 
emerging areas of scientific opportunity, public health challenges, or knowledge gaps that deserve 
special emphasis and might benefit from collaboration between two or more institutes or centers. 
For FY2012, the President requested $557 million for the Common Fund, up $14 million (2.6%) 
from FY2011.  
Congressional Action on FY2012 Appropriations. The Senate Appropriations Committee 
reported S. 1599, its FY2012 Labor/HHS/Education bill, on September 22, 2011 (S.Rept. 112-
84). The bill recommended $30.5 billion for NIH, a decrease of $190 million (-0.6%) from the 
FY2011 level of $30.7 billion and $1,250 million below the request. In addition, the committee 
released a draft bill for Interior/Environment appropriations that would have provided $80 million 
for NIH (see Note h on Table 8). The committee approved NIH’s plan to abolish NCRR and 
create NCATS, though funding recommended for NCATS and all the other components was 
lower than requested under the realignment. The NCATS appropriation would have included $20 
million for the Cures Acceleration Network and would have maintained level funding for the 
Clinical and Translational Science Awards. The committee criticized NIH for not providing a 
formal, timely request for the restructuring proposal. Funding for the PHS Evaluation Set-Aside 
was maintained at 2.5%. The committee included $299 million in the appropriation for transfer to 
the Global HIV/AIDS Fund. 
The House Appropriations Committee did not report a Labor/HHS bill for FY2012, but the 
chairman of the subcommittee introduced H.R. 3070 on September 29, 2011, accompanied by a 
detailed funding table (see Note c on Table 8). The bill would have provided $31.7 billion for 
NIH, the same level as the request and an increase of $1,160 million (3.8%) over FY2011. In 
addition, the House committee included $79 million for NIH in its Interior/Environment 
appropriations bill (see Note h on Table 8). H.R. 3070 did not provide for the creation of NCATS 
or the elimination of NCRR. It would have funded all the existing NIH components at the same 
level as the request, except that $100 million would have shifted from Office of the Director to 
NCRR. The Director was told to ensure that at least $488 million be provided for the CTSA 
program, and that up to $2 million could be used for an advisory board to plan for the Cures 
Acceleration Network. The bill required support of at least 9,150 new and competing RPGs, 
maintenance of an allocation ratio of 90% to 10% in support of extramural versus intramural 
activities, funding for the PHS Evaluation Set-Aside at 2.4%, and would have prohibited any 
funding of patient-centered outcomes research (comparative effectiveness research). No funding 
was included for transfer to the Global Fund. 
The final conference agreement enacted in P.L. 112-74 gave NIH $30.690 billion in Labor/HHS 
funding (Division F) and an additional $79 million in Interior/Environment funding (Division E), 
for a total of $30.769 billion in discretionary budget authority.48 Although that amount is only $2 
million above the FY2011 level of $30.767 billion, it actually gives NIH $299 million (1.0%) 
more than in FY2011 to spend on its own programs. The FY2011 appropriations required NIH to 
transfer $297 million to the Global HIV/AIDS Fund, whereas the FY2012 appropriations did not 
                                                 
48 As noted earlier, the dollar amounts included here and in the text and tables of Division F (Labor/HHS) of the 
conference report and the joint explanatory statement do not reflect an across-the-board rescission of 0.189% mandated 
in Section 527. The rescission is to be applied to all discretionary programs, projects, and activities except Pell Grants 
(Department of Education). A similar rescission of 0.16% applies to Division E accounts (Interior appropriations). 
Final amounts will be updated after agencies have submitted the FY2012 operating plans required in Section 517 of 
Division F. 
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Federal Research and Development Funding: FY2012 
 
designate any funds for transfer. Funding for the PHS Evaluation Set-Aside was maintained at 
2.5%. 
With the FY2012 appropriations, Congress approved NIH’s plan to create NCATS, abolish 
NCRR, and distribute NCRR’s programs to NCATS and other NIH entities.49 In Table 8, funding 
for NCATS and the other realigned programs is displayed for the Senate bill and the enacted 
FY2012 appropriations, but the columns for FY2011, the FY2012 request, and the House bill 
display amounts reflecting NIH’s original alignment (i.e., they have not been made comparable 
for the NCATS-related shifts in funding). A table in the explanatory statement accompanying the 
FY2012 conference report (H.Rept. 112-331, pp. 1135-1136) displays the comparable 
adjustments for FY2011 (which are budget-neutral) and allows comparison with the FY2012 
amounts for all the institutes and centers. Analysis of the table indicates that the $299 million 
increase provided in the FY2012 appropriations was allocated as follows: $76 million boosted the 
Buildings and Facilities account to $126 million (requested after a large cut in FY2011; $60 
million went to two specific increases discussed below (CAN and IDeA); and the $163 million 
balance was divided proportionally among all the institutes, centers, and the Office of the 
Director, with each receiving an increase of 0.54%. 
In the explanatory statement accompanying the conference report, the conferees gave detailed 
instructions on the implementation of certain aspects of NCATS. They stressed that the role of 
NCATS is to research ways to re-engineer and streamline the process of therapeutics 
development.50 NCATS was directed to foster partnerships between extramural researchers, 
industry, and government entities to speed commercialization of new therapies through a market-
based approach. Funding for two NCATS programs was specified in bill language: at least $488 
million from all NIH funds for the CTSA program (a $30 million increase) and up to $10 million 
for the Cures Acceleration Network. The conferees gave NIH instructions to further study the use 
of the CAN authority and to survey other federal and private sector activities relating to CAN. 
They also expressed disappointment with the informal way that NIH had requested the 
NCATS/NCRR reorganization and mentioned concerns that NIH had not properly involved the 
Scientific Management Review Board in evaluating the merits of the proposal. They pointed out 
that another reorganization being contemplated by NIH—a possible merger of the institutes 
concerned with research on drug abuse and alcohol abuse—should draw on lessons learned from 
the creation of NCATS. 
The conferees also made comments on selected other NIH programs, particularly stressing that 
NIH ensure support of the extramural research community by funding as many new and 
competing research project grants as possible at a reasonable award level. Extramural research 
should be maintained at about 90% of the NIH budget, with basic research retaining its current 
(unspecified) share. The Institutional Development Awards (IDeA) program was given a $50 
million increase (22%), and NIH was encouraged to broaden the eligibility criteria for these 
research capacity and infrastructure grants. Finally, NIH was directed to conduct a trans-NIH 
review of processes for formulating and completing clinical trials, building on recommendations 
from a 2010 Institute of Medicine study of cancer clinical trials. 
                                                 
49 Authorizing language amending the PHS Act to accomplish the reorganization appears in Section 221 of Division F. 
50 See National Institutes of Health, “NIH Establishes National Center for Advancing Translational Sciences,” press 
release, December 23, 2011, http://www.nih.gov/news/health/dec2011/od-23.htm. 
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Federal Research and Development Funding: FY2012 
 
Table 8. National Institutes of Health Funding 
(in millions of dollars) 
FY2012 
FY2012 
FY2012 
FY2011 
FY2012 
House 
Senate 
Enacted 
Component 
Enacteda 
Requestb 
Billc 
Comm.d 
P.L. 112-74e 
Cancer (NCI) 
5,059 
5,196 
5,196 
5,002 
5,082 
Heart/Lung/Blood (NHLBI) 
3,070 
3,148 
3,148 
3,036 
3,085 
Dental/Craniofacial Research (NIDCR) 
410 
420 
420 
405 
411 
Diabetes/Digestive/Kidney (NIDDK) 
1,792 
1,838 
1,838 
1,772 
1,800 
Neurological Disorders/Stroke (NINDS) 
1,622 
1,664 
1,664 
1,604 
1,629 
Allergy/Infectious Diseases (NIAID)f  
4,776 
4,916 
4,916 
4,725 
4,499 
General Medical Sciences (NIGMS) 
2,034 
2,102 
2,102 
2,347 
2,435 
Child Health/Human Development (NICHD) 
1,318 
1,352 
1,352 
1,303 
1,324 
Eye (NEI) 
701 
719 
719 
693 
704 
Environmental Health Sciences (NIEHS) 
684 
701 
701 
676 
687 
Aging (NIA) 
1,100 
1,130 
1,130 
1,088 
1,106 
Arthritis/Musculoskeletal/Skin (NIAMS) 
534 
548 
548 
528 
537 
Deafness/Communication Disorders (NIDCD) 
415 
426 
426 
410 
417 
Nursing Research (NINR) 
144 
148 
148 
143 
145 
Alcohol Abuse/Alcoholism (NIAAA) 
458 
469 
469 
453 
460 
Drug Abuse (NIDA) 
1,051 
1,080 
1,080 
1,039 
1,055 
Mental Health (NIMH)  
1,477 
1,517 
1,517 
1,461 
1,483 
Human Genome Research (NHGRI) 
511 
525 
525 
506 
514 
Biomedical Imaging/Bioengineering (NIBIB) 
314 
322 
322 
334 
339 
Research Resources (NCRR) 
1,258 
1,298 
1,398 
0 
0 
Complementary/Alternative Medicine (NCCAM) 
128 
131 
131 
126 
128 
Minority Health/Health Disparities (NIMHD)g  
210 
215 
215 
273 
277 
Fogarty International Center (FIC) 
69 
71 
71 
69 
70 
Advancing Translational Sciences (NCATS) 
0 
0
0
582 
576 
National Library of Medicine (NLM) 
337 
387 
387
359 
338 
Office of Director (OD)  
1,167 
1,298 
1,198 
1,439 
1,462 
Common Fund (non-add) 
(543)
(557) 
(557) 
(538) 
(546) 
Buildings & Facilities (B&F) 
50 
126 
126 
126 
126 
Subtotal, Labor/HHS Appropriation 
30,688 31,748 31,748 
30,498 
30,690 
Superfund (Interior appropriation to NIEHS)h  
79 
81 
79 
80 
79 
Total, NIH discretionary budget authority 
30,767 31,829 31,827 
30,578 
30,769 
Pre-appropriated Type 1 diabetes fundsi 150 
150 
150
150 
150 
PHS Evaluation Tap fundingj 8 
8 
8
8 
8 
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Federal Research and Development Funding: FY2012 
 
FY2012 
FY2012 
FY2012 
FY2011 
FY2012 
House 
Senate 
Enacted 
Component 
Enacteda 
Requestb 
Billc 
Comm.d 
P.L. 112-74e 
Total, NIH program level 30,926 
31,987 
31,985 
30,737 
30,927 
Total, NIH program level (less Global 
30,628 31,687 31,985 
30,438 
30,927 
Fund) 
Sources: FY2011 Enacted, FY2012 Request, and FY2012 Enacted columns are based on the conference report 
tables in H.Rept. 112-331 on the Consolidated Appropriations Act, 2012 (H.R. 2055, P.L. 112-74). FY2012 
House and Senate columns are based on texts of H.R. 3070 as introduced and S. 1599 as reported. Details may 
not add to totals due to rounding. 
a.  P.L. 112-10 provided FY2011 funding for NIH as fol ows: from the base of the FY2010 funding level enacted 
in P.L. 111-117 ($31,009 million in the Labor/HHS title and $79 million in the Interior/Environment title), 
the amount for NIH was reduced by $50 million (Buildings and Facilities), $210 million (pro rata reduction 
in all NIH accounts for institutes and centers and the Office of the Director), and by a 0.2% across-the-
board rescission. The FY2011 level reflects real transfer of $998 thousand from HHS/Office of the 
Secretary to NIMH. 
b.  The FY2012 request reflects amounts as proposed in the original President’s budget released February 14, 
2011. In June 2011, NIH sent Congress revised tables reflecting the transfer of NCRR programs to NCATS 
and some other ICs. The proposed realignment was not submitted as an official budget amendment.  
c.  H.R. 3070, making appropriations for Labor/HHS/Education for FY2012, was introduced on September 29, 
2011, by the chairman of the House Appropriations Labor/HHS subcommittee, and a detailed funding table 
was posted on the committee’s website at http://appropriations.house.gov/UploadedFiles/
FY12LH_Detail_SC_10_Rev_with_comparable.pdf. The bill was not considered by the subcommittee or 
the ful  committee and was not reported. 
d.  The Senate Appropriations Committee reported its FY2012 Labor/HHS/Education bill, S. 1599, S.Rept. 112-
84, on September 22, 2011, after subcommittee markup on September 20. 
e.  The Consolidated Appropriations Act, 2012 (H.R. 2055, P.L. 112-74), enacted December 23, 2011, included 
nine regular FY2012 appropriations bills. NIH appropriations were provided in Division F (Labor/HHS/ 
Education) and Division E (Interior/Environment). Amounts shown do not reflect across-the-board 
rescissions of 0.189% (Division F) and 0.16% (Division E). 
f. 
In three of these columns, the NIAID appropriation includes funds for transfer to the Global Fund for 
HIV/AIDS, Tuberculosis, and Malaria ($297 million in FY2011, $300 million in the FY2012 request, and $299 
million in the Senate bill). The House bill and the FY2012 enacted appropriation did not provide for the 
transfer. 
g.  Section 10334(c) of P.L. 111-148 redesignated the Center as an Institute.  
h.  Separate account in the Interior/Environment appropriations for NIEHS research activities related to 
Superfund. The House Appropriations Committee reported H.R. 2584 on July 12, 2011 (H.Rept. 112-151). 
The Senate committee released the text of a draft bill and a detailed table on October 14, 2011, available at 
http://appropriations.senate.gov/news.cfm?method=news.view&id=3f4832f4-6adb-4be8-9c6f-eabff62cc056. 
Final FY2012 Interior/Environment appropriations were enacted as Division E of P.L. 112-74. 
i. 
Funds available to NIDDK for diabetes research under PHS Act §330B (provided by P.L. 110-275 and P.L. 
111-309). Funds have been appropriated through FY2013.  
j. 
 Additional funds for NLM from PHS Evaluation Set-Aside (§241 of PHS Act). 
Congressional Research Service 
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Federal Research and Development Funding: FY2012 
 
Department of Energy51 
The Administration requested $14.447 billion for Department of Energy (DOE) R&D and related 
programs in FY2012, including activities in three major categories: science, national security, and 
energy. This request was 24.4% more than the FY2011 appropriation of $11.610 billion. The 
House-passed bill would have provided $11.256 billion. The Senate-reported bill would have 
provided $11.552 billion. The final appropriation was $11.904 billion. (See Table 9 for details.) 
The request for the DOE Office of Science was $5.416 billion, an increase of 12% from the 
FY2011 appropriation of $4.843 billion. The Administration’s stated goal is to double the funding 
of the Office of Science. This continues a plan initiated by the Bush Administration in January 
2006. The original target under both Administrations was to achieve the doubling goal in the 
decade from FY2006 to FY2016. The current policy no longer specifies a completion date. The 
FY2012 request was 49% more than the FY2006 baseline. The America COMPETES 
Reauthorization Act of 2010 (P.L. 111-358) authorized $5.614 billion for the Office of Science in 
FY2012. The House bill would have provided $4.800 billion. The Senate bill would have 
provided $4.843 billion. The final appropriation was $4.889 billion. 
The Office of Science includes six major research programs. In the largest program, basic energy 
sciences, the request included $34 million for a new energy innovation hub on materials for 
batteries and energy storage and $24 million for the existing hub on fuels from sunlight 
(previously funded by the DOE Office of Energy Efficiency and Renewable Energy).52 The 
biological and environmental research program was to receive $103 million for foundational 
genomics research (versus $34 million in FY2010). In the high energy physics program, 
operations ended at the Tevatron facility in Illinois during FY2011. In fusion energy sciences, the 
request proposed reducing the U.S. contribution to the International Thermonuclear Experimental 
Reactor (ITER) to $105 million (from $135 million in FY2010). Despite a slip of several years in 
the expected start-up date for ITER, DOE budget documents for FY2012 stated that “the costs 
associated with the schedule delays to date ... are manageable within the existing ... [total project] 
cost range” of $1.45 billion to $2.2 billion.53 This statement, however, predated the March 2011 
Fukushima earthquake and tsunami, which damaged component test facilities in Japan and may 
result in additional delays.54 The House, Senate, and final bills all included significantly less than 
the Administration’s request for basic energy sciences, biological and environmental research, 
and to a lesser extent, nuclear physics. All three bills provided $20 million for the new energy 
innovation hub and the requested amount for the existing one. The Senate bill would have 
                                                 
51 This section was written by Daniel Morgan, Specialist in Science and Technology Policy, CRS Resources, Science, 
and Industry Division. 
52 The Administration proposed to initiate eight energy innovation hubs in FY2010; Congress funded three. The 
FY2012 budget request included six hubs. The three new hubs were to focus on batteries and energy storage, critical 
materials, and smart grid technologies and systems. The final appropriation included funding for five; Congress did not 
fund the smart grid hub. The aim of energy innovation hubs is “to address basic science and technology hindering the 
nation’s secure and sustainable energy future” by assembling multidisciplinary teams of researchers “spanning science, 
engineering, and other disciplines, but focused on a single critical national need identified by the Department.” (DOE 
FY2011 budget justification, vol. 4, p. 86) 
53 DOE FY2012 congressional budget justification, vol. 4, p. 234. 
54 Geoff Brumfiel, “Japan Quake Rocks Fusion Project: Damaged Facilities Force Further Delay to ITER Experiment,” 
Nature, May 31, 2011. 
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Federal Research and Development Funding: FY2012 
 
provided $65 million less than the request for fusion energy sciences, but the House bill and the 
final bill both included slightly more than the request. The final appropriation for ITER was “not 
more than” the requested amount. 
The request for DOE national security R&D was $4.175 billion, a 12.3% increase from $3.718 
billion in FY2011. The request proposed a $195 million increase for the naval reactors program to 
accelerate the continuing design of reactors for the Ohio-class ballistic missile submarine, 
modernization of the land-based prototype reactor, and recapitalization of program infrastructure. 
The requests for nuclear weapons R&D and nonproliferation and verification R&D included $168 
million and $56 million respectively to fund contractor pension payments resulting from the 
transition of management contracts at Los Alamos and Lawrence Livermore National 
Laboratories. The House bill would have provided $3.725 billion for national security R&D, 
including $123 million less than the request for the naval reactors program and $76 million less 
than the request for advancing the science of weapons certification. It included a total of $147 
million for the Los Alamos and Livermore pension liabilities. The Senate bill would have 
provided $54 million less than the request for naval reactors. The Senate report directed DOE not 
to fund design, preparation, or execution of a “scaled experiment,” one element of the 
Administration’s proposal for advanced weapons certification. The final appropriation for naval 
reactors was between the House and Senate amounts. For contractor pension liabilities, the final 
bill included a total of $224 million, the same as the request. 
The request for DOE energy R&D was $4.856 billion, up 59.2% from $3.049 billion in FY2011. 
Most energy efficiency and renewable energy subprograms were to increase by between 50% and 
200%, with the exception of R&D on hydrogen and fuel cell technologies, which were to increase 
by just 2.5%. “Consistent with the Administration’s policy to phase out fossil fuel subsidies,” the 
request included no funds for natural gas technologies or unconventional fossil energy 
technologies.55 The request for nuclear energy was a 4% increase from FY2011. The request 
proposed to increase the funding of the Advanced Research Projects Agency–Energy (ARPA-E) 
more than threefold, to $650 million (including $100 million in mandatory funding from a 
proposed Wireless Innovation Fund supported by the proceeds of spectrum auctions). The House 
bill would have provided $2.731 billion for DOE energy R&D, including $1.570 billion less than 
the request for energy efficiency and renewables and $25 million more than the request for fossil 
energy R&D. The Senate bill would have provided $2.755 billion, including $1.245 billion less 
than the request for efficiency and renewables, $195 million less than the request for fossil energy 
R&D, and $170 million less than the request for nuclear energy. Both bills would have provided 
about half the request for electricity delivery and reliability R&D and less than half the request 
for ARPA-E. The final bill included more than either the House or Senate bill, though still less 
than the request, for ARPA-E and for energy efficiency and renewables. For nuclear energy, it 
included more than the House or Senate bill or the request. The final appropriation for fossil 
energy was between the House and Senate bills. 
                                                 
55 DOE FY2012 budget justification, vol. 3, pp. 513 and 517. 
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Federal Research and Development Funding: FY2012 
 
Table 9. Department of Energy R&D and Related Programs 
(in millions of dollars) 
FY2011 
FY2012 
FY2012
FY2012 
FY2012
 
Enacted 
 Request 
House 
Senate 
Enacted 
Science 
$4,843  $5,416  $4,800 $4,843 $4,889 
  Basic Energy Sciences 
1,678 
1,985 
1,688 
1,694 
1,694 
  High Energy Physics 
795 
797 
797 
780 
792 
  Biological and Environmental Research 
612 
718 
547 
622 
612 
 
Nuclear 
Physics 
540  605  552 550 550 
  Advanced Scientific Computing Research 
422 
466 
427 
442 
442 
  Fusion Energy Sciences 
375 
400 
406 
335 
402 
 
Other 
420  445  382 420 397 
National 
Security 
3,718  4,175  3,725 3,955 3,838 
 Weapons 
Activitiesa 2,379b 2,572  2,338 2,426 2,391 
 
Naval 
Reactors 
959  1,154  1,031 1,100 1,080 
  Nonproliferation and Verification R&D 
361 
418 
346 
418 
356 
  Defense Envtal. Cleanup Technol. Development 
19 
32 
10 
11 
11 
Energy 
3,049  4,856  2,731 2,755 3,177 
  Energy Efficiency and Renewable Energyc 
1,594  2,806  1,237 1,561 1,687 
  Fossil Energy R&D 
445 
453 
477 
258 
347 
 
Nuclear 
Energy 
726  754  734 584 769 
  Electricity Delivery & Energy Reliability R&D 
105 193 104 101  99 
  Advanced Research Projects Agency–Energy 
180 
650d 180 250 275 
Total 
11,610  14,447  11,256 11,552 11,904 
Source: FY2011 enacted from P.L. 112-10, H.Rept. 112-118, and S.Rept. 112-75. FY2012 request from DOE 
FY2012 budget justification, online at http://www.cfo.doe.gov/budget/12budget/index12.html. FY2012 House 
from H.R. 2354 as passed by the House and H.Rept. 112-118. FY2012 Senate from H.R. 2354 as reported in the 
Senate and S.Rept. 112-75. FY2012 enacted from P.L. 112-74 and H.Rept. 112-331. 
Notes: Totals may differ from the sum of their components due to rounding. All amounts are reduced for use 
of prior-year balances. 
a.  Including Stockpile Services R&D Support, Stockpile Services R&D Certification and Safety, Science, 
Engineering except Enhanced Surety and Enhanced Surveillance, Inertial Confinement Fusion, Advanced 
Simulation and Computing, National Security Applications, and a prorated share of Readiness in Technical 
Base and Facilities (and Legacy Contractor Pensions in the House and enacted bills). Additional R&D 
activities may take place in the subprograms of Directed Stockpile Work that are devoted to specific 
weapon systems, but these funds are not included in the table because detailed funding schedules for those 
subprograms are classified. 
b.  Estimated by CRS. Some sub-account amounts in this category were not specified by P.L. 112-10 or stated 
in the House or Senate committee reports.  
c.  Excluding Weatherization and Intergovernmental Activities.  
d.  Includes $100 million in proposed mandatory funding.  
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Federal Research and Development Funding: FY2012 
 
National Science Foundation56 
The National Science Foundation (NSF) supports basic research and education in the non-medical 
sciences and engineering. Congress established the Foundation as an independent federal agency 
in 1950 and directed it to “promote the progress of science; to advance the national health, 
prosperity, and welfare; to secure the national defense; and for other purposes.”57 The NSF is a 
primary source of federal support for U.S. university research, especially in certain fields such as 
mathematics and computer science. It is also responsible for significant shares of the federal 
science, technology, engineering, and mathematics (STEM) education program portfolio and 
federal STEM student aid and support. 
The President’s FY2012 budget request for the NSF was $7.767 billion, a $961.1 million increase 
(14.1%) over NSF’s FY2011 Current Plan level of $6.806 billion.58 Most of the Administration’s 
requested increase would have gone to the main research conduct account. The remainder would 
have gone to other Foundation accounts, including those that primarily support education, agency 
operations, and research facilities and equipment. Overall, the distribution of the Administration’s 
FY2012 requested increase was largely consistent with the previously existing distribution of 
funds across the NSF. 
P.L. 112-55 provides $7.033 billion to the NSF in FY2012. This amount is $227.2 million (3.3%) 
more than the FY2011 Current Plan level and $733.9 million (9.4%) less than the President’s 
request. (See Table 10 for details.) Compared to the distribution of funding across NSF accounts 
under the FY2011 Current Plan, P.L. 112-55 shifts about 1.0% of the Foundation’s budget to 
research and construction activities from education and agency operations in FY2012. This 
change appears to reflect the position of the House Appropriations Committee’s recommendation, 
which favored the research account, combined with the Senate’s position, which favored the 
construction account.  
A primary concern in the congressional debate about FY2012 funding for NSF centered on the 
so-called “doubling path” policy. Since 2006 federal policymakers have sought to increase 
support for research in the physical sciences and engineering. To that end, they sought to double 
aggregate funding for the NSF, NIST laboratories and construction accounts, and the DOE Office 
of Science (collectively, the “targeted accounts”), which many policymakers perceive as key to 
U.S. innovation and competitiveness.59 The current status of the doubling path is discussed in 
detail in this report in the “Presidential Initiatives” section. 
                                                 
56 This section was written by Heather B. Gonzalez, Specialist in Science and Technology Policy, CRS Resources, 
Science, and Industry Division. Numbers are rounded. Data available upon request. 
57 The National Science Foundation Act of 1950 (P.L. 81-507).  
58 National Science Foundation, FY2012 Budget Request to Congress, February 14, 2011, http://www.nsf.gov/about/
budget/fy2012/pdf/00a_fy2012.pdf; and NSF “FY2011 Current Plan, By Program Activity” as per e-mail 
communication between CRS and Karen Pearce, senior legislative policy analyst, Office of Legislative and Public 
Affairs, National Science Foundation, July 21, 2011. The NSF FY2011 Current Plan excludes a $54.0 million transfer 
to the U.S. Coast Guard for icebreaking services.  
59 For additional information on the doubling effort, see CRS Report R41951, An Analysis of Efforts to Double Federal 
Funding for Physical Sciences and Engineering Research, by John F. Sargent Jr.  
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Federal Research and Development Funding: FY2012 
 
Another issue raised in the general debate about funding for NSF focused on the Foundation’s 
ability to effectively manage its grants. This is relevant to R&D policy because much of the 
Foundation’s R&D funding is distributed via the grant process. In a House hearing, NSF’s 
Inspector General Allison C. Lerner testified that—among other issues—the Foundation faced 
ongoing challenges in ensuring that grant recipients comply with grant terms and conditions. 
According to Lerner’s testimony, the NSF attributes this problem, at least in part, to staffing 
constraints. Lerner postulated that, “If the Foundation’s budget continues to grow, the resulting 
increase in awards to monitor will compound this challenge.”60  
Research and Related Activities (RRA) is the largest account at the NSF. It is also the largest 
source of R&D grants and funding at the Foundation. The Administration requested $6.254 
billion for RRA in FY2012, a $743.7 million (13.5%) increase over the FY2011 Current Plan 
level of $5.510 billion. The Administration’s FY2012 request for RRA highlighted research in 
cyber-infrastructure, clean energy, nanotechnology, robotics, and the SEES (Science, 
Engineering, and Education for Sustainability) portfolio, among others.  
P.L. 112-55 provides $5.719 billion for RRA in FY2012. This amount is $209.1 million (3.8%) 
more than the FY2011 Current Plan level and $534.5 million (8.5%) less than the President’s 
request. Among other things, P.L. 112-55 allows the NSF to transfer up to $50.0 million from 
RRA to the Foundation’s main construction account and permits the NSF to use RRA funds to 
reimburse other federal agencies for support of the U.S. Antarctic program. If the NSF exercises 
this authority, the actual amount available to RRA activities in FY2012 would be reduced. The 
House Appropriations Committee recommended increasing the RRA account by $91.5 million 
(1.7%) over the FY2011 Current Plan level.61 As initially passed by the Senate, H.R. 2112 would 
have reduced the RRA account by $66.9 million (1.2%) from the FY2012 Current Plan level. 
In addition to the provisions specifically included in the conference report on the bill (H.Rept. 
112-284), the report also approves report language included in H.Rept. 112-169 or S.Rept. 112-78 
that is not changed by the conference in its report. The conference report on H.R. 2112 (which 
became P.L. 112-55) endorses Administration-proposed reductions to RRA programs in 
FY2012—except for the proposed changes to the Radio Astronomy program. It also adopts 
language from H.Rept. 112-169 supporting planned NSF activities in advanced manufacturing 
and agreed to language from S.Rept. 112-78 providing $165.6 million for cybersecurity research. 
Provisions in one or more of the reports include encouraging the Foundation to sustain and 
increase investments in neuroscience; directing the NSF to report on its plans to offer innovation 
prizes and on ways to balance access to, and protection of, scientific data; and attending to the 
Foundation’s astronomy activities, as well as its support for scientific facilities and 
instrumentation. 
P.L. 112-55 also provides $150.9 million in RRA funds for the Experimental Program to 
Stimulate Competitive Research (EPSCoR) program in FY2012. This amount is $4.1 million 
more than the FY2011 enacted funding level of $146.8 million and $9.6 million less than the 
Administration’s FY2012 request. The EPSCoR program seeks to improve the research 
                                                 
60 Testimony of NSF Inspector General Allison C. Lerner, in U.S. Congress, House Committee on Appropriations, 
Subcommittee on Commerce, Justice, Science, and Related Agencies, Oversight of the National Science Foundation 
(NSF) and the National Aeronautics and Space Administration (NASA), hearings, 112th Cong., 1st sess., February 11, 
2011, p. 3, http://appropriations.house.gov/_files/NSFIGAllisonCLerner.pdf. 
61 The House Committee on Appropriations’ recommendation for RRA included $54.0 million that in prior years was 
transferred to the U.S. Coast Guard for icebreaking services.  
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competitiveness of states with historically low federal research funding rates. NSF’s FY2012 
budget documents indicate that the Foundation plans to have EPSCoR independently evaluated.62  
Other accounts that support R&D at the National Science Foundation include the Major Research 
Equipment and Facilities Construction (MREFC) and the Education and Human Resources 
(EHR) accounts. Although EHR primarily funds STEM education programs, the Foundation 
indicates that it supports R&D in this account as well. 
The Administration’s FY2012 MREFC request for $224.7 million was a $107.6 million increase 
(91.9%) over the FY2011 Current Plan level of $117.1 million. The MREFC request included 
funding for the National Ecological Observatory Network (NEON, $87.9 million), Ocean 
Observatories Initiative (OOI, $102.8 million), and other projects. The Administration requested 
no new MREFC funds for the Alaska Region Research Vessel or IceCube Neutrino Observatory 
in FY2012, both of which are now fully funded.  
P.L. 112-55 provides $167.1 million for the MREFC account in FY2012, which is $50.0 million 
(42.8%) more than the FY2011 Current Plan level and $57.6 million (25.6%) less than the 
Administration’s FY2012 budget request. In addition, P.L. 112-55 gives the Foundation the option 
of transferring as much as $50.0 million from RRA to MREFC. The conference report on H.R. 
2112 directs the NSF to prioritize projects that are near completion and raises concerns about 
construction funding management at the Foundation (particularly the management of contingency 
funds). S.Rept. 112-78 states that its recommendation includes funding for certain ongoing 
projects (e.g., Atacama Large Millimeter Array) and for continued construction of the OOI. 
S.Rept. 112-78 also indicates that the NSF may use funds transferred from the RRA account to 
fully fund OOI or begin work on NEON. 
The President requested $911.2 million for EHR in FY2012, a $50.2 million increase (5.8%) over 
the FY2011 Current Plan level of $861.0 million. Relative to the FY2011, the FY2012 request 
would have shifted (by 1.2%) the EHR portfolio in the direction of graduate support.63 This is 
relevant to R&D policy because (1) graduate students are a significant component of the U.S. 
R&D workforce, and (2) because graduate student enrollment in science and engineering (S&E) 
fields appears to be increasing, which may increase demand for the Graduate Research 
Fellowship (GRF) and thereby increase caseload pressure on this account. The Administration’s 
FY2012 request also proposed program changes in EHR including reorganization, addition, and 
elimination of programs.  
P.L. 112-55 provides $829.0 million for EHR in FY2012. This amount is $32.0 million (-3.7%) 
less than the FY2011 Current Plan level and $82.2 million (-9.1%) less than the Administration’s 
request. The conference report on H.R. 2112 endorses the Administration’s proposed terminations 
and reductions in EHR—except for proposed reductions to the Math and Science Partnership and 
Robert Noyce Scholarship programs. The conference report also adopts FY2011 funding levels 
for NSF’s Broadening Participation at the Core programs (e.g., the Tribal Colleges and 
Universities Program), directs the NSF to report on how it will address the needs of Hispanic-
Serving Institutions, and provides $20.0 million more than the requested level of funding for the 
Federal Cyber Service: Scholarships for Service program ($45.0 million, total)—among other 
                                                 
62 National Science Foundation, “Integrative Activities,” FY2012 Budget Request to Congress, February 14, 2011, p. 
IA-4, http://www.nsf.gov/about/budget/fy2012/pdf/00a_fy2012.pdf.IA-4. 
63 Budget data as per e-mail communication between CRS and House Appropriations Committee staff, July 19, 2011. 
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things. Both H.Rept. 112-169 and S.Rept. 112-78 urge the NSF to ensure that GRF applicants are 
not rejected for reasons unrelated to the merits of their proposed research (e.g., the applicant’s 
major). S.Rept. 112-78 strongly encourages NSF to continue support for undergraduate STEM 
education and the Professional Science Master’s program. 
The Administration requested $357.7 million for the Agency Operations and Award Management 
(AOAM) account, a $58.3 million (19.5%) increase over NSF’s FY2011 Current Plan level of 
$299.4 million. The FY2012 request included funding for a new NSF headquarters. The 
Administration also sought increases of $1.0 million and $0.3 million, respectively, for NSF’s 
Office of the Inspector General (OIG) and the National Science Board (NSB). P.L. 112-55 
provides $299.4 million for the AOAM account, $14.2 million for the OIG ($200,000 increase 
over the FY2011 Current Plan level), and $4.4 million for the NSB. S.Rept. 112-78 states that the 
purpose of the increase for the OIG is to enhance accountability. H.Rept. 112-169 encourages the 
OIG to focus specifically on oversight activities with potential monetary ramifications (such as 
grantee oversight and management). 
The Administration’s FY2012 budget request proposed funding for certain NSF-wide investments 
that draw from more than one Foundation account, including the interagency Networking and 
Information Technology Research and Development (NITRD) and National Nanotechnology 
Initiative (NNI) efforts, and NSF’s Science, Engineering, and Education for Sustainability (SEES) 
portfolio. For FY2012 the Administration requested $1.258 billion for NITRD64 and $456.0 
million for the NNI.65 (NSF is a principal funding agency for both of these efforts.) The 
Administration also asked for $998.2 million for the SEES portfolio.66 FY2012 congressional 
funding bills and related documents do not specify funding for these accounts as such. 
Finally, the Administration’s FY2012 request proposed eliminating six NSF programs: Deep 
Underground Science and Engineering Laboratory, Graduate STEM Fellow in K-12 Education, 
National STEM Distributed Learning Program, Research Initiation Grants to Broaden 
Participation in Biology, Science Learning Centers, and the Synchrotron Radiation Center. Funds 
from these activities would be redirected to other Foundation accounts. 
                                                 
64 For more information on NITRD, see CRS Report RL33586, The Federal Networking and Information Technology 
Research and Development Program: Background, Funding, and Activities, by Patricia Moloney Figliola. 
65 For more information on the NNI, see CRS Report RL34401, The National Nanotechnology Initiative: Overview, 
Reauthorization, and Appropriations Issues, by John F. Sargent Jr. 
66 The SEES portfolio focuses on sustainability, including fundamental climate and energy science research. 
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Table 10. National Science Foundation 
(in millions of dollars) 
FY2011 
H.R. 2596 
H.R. 2112 
FY2012  
 
Current 
FY2012 
As Reported  As Passed in 
Enacted 
Plan 
Request 
in House 
Senate 
P.L. 112-55 
Biological 
Sciences 
711.6 
794.5 n/d n/d n/d 
Computer & Information 
Science & Engineering 
635.1 
728.4 n/d n/d n/d 
Engineering 
762.7 
908.3 n/d n/d n/d 
Geosciences 
884.8 
979.2 n/d n/d n/d 
Mathematical and Physical 
1,308.3 
1,432.7 n/d n/d n/d 
Sciences 
Social, Behavioral & Economic 
247.2 
301.1 n/d n/d n/d 
Sciences 
Office of Cyberinfrastructure 
209.9 
236.0 
n/d 
n/d 
n/d 
Office of International Science & 
49.0 58.0 n/d n/d n/d 
Engineering 
U.S. Polar Programs 
439.4 
477.4 
n/d 
n/d 
n/d 
Integrative 
Activities 
260.3 
336.3 n/d n/d n/d 
U.S. Arctic Research Comm. 
1.6 
1.6 
n/d 
n/d 
n/d 
Subtotal Research & 
5,509.9 6,253.5 5,601.4 5,443.0 5,719.0 
Related Activities 
Education & Human Resources 
861.0 
911.2 
834.2 
829.0 
829.0 
Major Research Equipment & 
117.1 224.7  99.9 117.1 167.1 
Facilities Construction 
Agency Ops. & Award Mgmt. 
299.4 
357.7 
299.1 
290.4 
299.4 
National Science Board  
4.5 
4.8 
4.5 
4.4 
4.4 
Office of Inspector General 
14.0 
15.0 
14.0 
14.2 
14.2 
Total 
NSF 
6,805.9 7,767.0 6,853.0 6,698.1 7,033.1 
Source: National Science Foundation, FY2012 Budget Request to Congress, Arlington, VA, February 14, 2011; and 
NSF “FY2011 Current Plan, By Program Activity” as per e-mail communication between the author and Karen 
Pearce, senior legislative policy analyst, Office of Legislative and Public Affairs, National Science Foundation, July 
21, 2011. 
Notes: The totals do not include carryovers or retirement accruals. Totals may differ from the sum of the 
components due to rounding. FY2011 enacted levels may differ. U.S. Polar Programs funding levels in the FY2011 
Current Plan column exclude $54.0 million transferred to the U.S. Coast Guard for icebreaking services (per P.L. 
112-10). The term “n/d” means “not defined.” 
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Department of Commerce 
National Institute of Standards and Technology67 
The National Institute of Standards and Technology (NIST) is a laboratory of the Department of 
Commerce with a mandate to increase the competitiveness of U.S. companies through appropriate 
support for industrial development of precompetitive, generic technologies and the diffusion of 
government-developed technological advances to users in all segments of the American economy. 
NIST research also provides the measurement, calibration, and quality assurance techniques that 
underpin U.S. commerce, technological progress, improved product reliability, manufacturing 
processes, and public safety. 
The final FY2012 appropriation for NIST totals $750.8 million, essentially the same as the 
$750.1 million provided in FY2011. This amount is 25.0% below the Administration’s request; 
7.1% above H.R. 2596, as reported from the House Committee on Appropriations; and 10.4% 
more than H.R. 2112, as originally passed by the Senate. Support for research and development 
under the Scientific and Technical Research and Services (STRS) account increases 14.0% from 
the FY2011 figure of $497.4 million to $567.0 million. This figure represents a 16.5% decrease 
from the President’s proposal, but is 9.7% more than that contained in H.R. 2596 and is 13.4% 
above the amount in the Senate-passed version of H.R. 2112. Under the Industrial Technology 
Services (ITS) account, the Manufacturing Extension Partnership (MEP) program receives $128.4 
million, the same appropriation as FY2011, 10.0% less than the budget request, identical to the 
support included in H.R. 2596, and 7.0% above H.R. 2112 as first passed by the Senate. No 
funding is provided for the Technology Innovation Program (TIP), the Baldrige National Quality 
Program, or a new program proposed in the President’s budget called the Advanced 
Manufacturing Technology Consortia (AMTech). The construction budget is $55.4 million, 
20.7% less than FY2011, 34.5% below the budget proposal, the same as in H.R. 2596, and 7.7% 
less than the original Senate-passed version of H.R. 2112. 
The Administration’s FY2012 budget proposed $1.001 billion in funding for NIST, a 33.4% 
increase over the FY2011 appropriation. The STRS account would have expanded 36.5% to 
$678.9 million (excluding the Baldrige National Quality Program which has been transferred out 
of STRS). Budgeted under the ITS account, the MEP program would have received $142.6 
million, 11.1% more than FY2011, while funding for TIP would have increased to $75.0 million, 
67.4% over the FY2011 figure. Also under ITS, support for the Baldrige program would have 
decreased 19.8% to $7.7 million. A new program, AMTech, would have been created and funded 
at $12.3 million. The construction budget would have increased 21.0% to $84.6 million. (See 
Table 11.) 
H.R. 2596, as reported from the House Committee on Appropriations, would have provided 
$700.8 million for NIST, 6.6% below the FY2011 appropriation and 30.0% below the President’s 
request. The $517.0 million in funding for the STRS account represented a 3.9% increase over 
FY2011, but would have been 23.8% below the proposed budget number. Support for MEP at 
$128.4 million was the same as FY2011, but would have been 10.0% less than the 
Administration’s request. Construction funding of $55.4 million reflected a 20.7% decrease from 
                                                 
67 This section was written by Wendy H. Schacht, Specialist in Science and Technology Policy, CRS Resources, 
Science, and Industry Division. 
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the FY2011 figure and was 34.5% below the budget proposal. No appropriations were provided 
for TIP, the Baldrige program, or AMTech. 
The FY2012 consolidated appropriations bill covering the Department of Commerce (among 
other agencies) originally passed by the Senate, H.R. 2112, would have funded NIST at $680.0 
million, 2.9% below the amount in H.R. 2596, 32.1% below the Administration’s budget request, 
and 9.3% below the FY2011 appropriation. Funding for the STRS account totaled $500.0 million, 
3.2% below the figure in H.R. 2596, 26.4% less than the budget request, and 1.4% below the 
amount appropriated in FY2011. Under the ITS account, $120.0 million would be provided for 
the MEP program. This amount was 6.5% less than that recommended in H.R. 2596 and that 
appropriated for FY2011, as well as 15.8% less than the Administration’s budget figure. No 
funding was provided for TIP, the Baldrige National Quality Program, or AMTech. Construction 
support would have totaled $60.0 million, 8.3% more than the amount included in the House bill, 
29.1% below the President’s budget number, and 14.2% below the FY2011 appropriation. 
NIST’s extramural programs (currently the Manufacturing Extension Partnership and the 
Technology Innovation Program), which are directed toward increased private sector 
commercialization, have been a source of contention. The Administration’s FY2012 budget 
would have established and provided support for an additional extramural program, AMTech. 
Some Members of Congress have expressed skepticism over a “technology policy” based on 
providing federal funds to industry for the development of “pre-competitive generic” 
technologies. This approach, coupled with pressures to balance the federal budget, has led to 
significant reductions in appropriations for several of these NIST activities. The Advanced 
Technology Program (ATP) and the MEP, which accounted for more than 50% of the FY1995 
NIST budget, were proposed for elimination. In 2007, ATP was terminated and replaced by the 
Technology Innovation Program. The final FY2012 appropriations legislation does not provide 
any funding for TIP or the AMTech program requested by the President.68  
Increases in spending for NIST laboratories that perform the research essential to the mission 
responsibilities of the agency have tended to remain small. As part of the American 
Competitiveness Initiative, announced by former President Bush in the 2006 State of the Union 
address, the Administration stated its intention to double funding over 10 years for “innovation-
enabling research” done, in part, at NIST through its “core” programs (defined as the STRS 
account and the construction budget). In April 2009, President Obama indicated his decision to 
double the budget of key science agencies, including NIST, over the next 10 years. In President 
Obama’s FY2011 budget the timeframe for doubling slipped to 11 years and his FY2012 budget 
was intentionally silent on a timeframe for doubling. While the FY2012 appropriations do not 
include an increase in support for NIST, there is a substantial (14.0%) increase in funding for 
R&D under the STRS account. 69 
                                                 
68 For additional information on the MEP and TIP programs, see CRS Report RS22815, The Technology Innovation 
Program, and CRS Report 97-104, Manufacturing Extension Partnership Program: An Overview, both by Wendy H. 
Schacht. 
69 For additional information on NIST, see CRS Report 95-30, The National Institute of Standards and Technology: An 
Appropriations Overview. 
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Table 11. NIST 
(in millions of dollars) 
H.R. 2112 
FY2012  
FY2011 
FY2012  
H.R. 2596 
As Passed by 
Enacted  
NIST Program 
Enacted 
Request 
As Reported 
Senate 
P.L. 112-55 
STRSa 
497.4 678.9 517.0 500.0 567.0 
ITS 
 
 
 
 
 
   TIP  
44.8 
75.0 
0 
0 
0 
 
 
 
MEP 
128.4 142.6 128.4 120.0 128.4 
   Baldrige 
9.6 7.7 0 0 0 
Program 
   AMTech 
 
12.3 
0 
0 
0 
Construction 
69.9 84.6 55.4 60.0 55.4 
NIST Totalb  750.1 1001.1 700.8 680.0 750.8 
Sources: NIST website (available at http://www.nist.gov/public_affairs/budget.htm), P.L. 111-117, P.L. 112-10, 
and Administration’s FY2012 Budget Request. 
a.  Excludes FY2011 funding for the Baldrige National Quality Program; funding for this program is included in 
FY2011 Enacted columns under ITS for comparison purposes.   
b.  Totals may differ from the sum of the components due to rounding.  
National Oceanic and Atmospheric Administration70 
The Commerce Department’s National Oceanic and Atmospheric Administration (NOAA) 
conducts scientific research in areas such as ecosystems, climate, global climate change, weather, 
and oceans; supplies information on the oceans and atmosphere; and manages coastal and marine 
organisms and environments. NOAA was created in 1970 by Reorganization Plan No. 4.71 The 
reorganization was intended to unify certain of the nation’s environmental activities and to 
provide a systematic approach for monitoring, analyzing, and protecting the environment.  
NOAA’s R&D efforts focus on three areas: climate; weather and air quality; and ocean, coastal, 
and Great Lakes resources. For FY2012, President Obama requested $736.9 million in R&D 
funding for NOAA, a 17.1% increase in funding from the FY2011 level of $629.2 million. R&D 
accounted for 13.4% of NOAA’s total FY2012 discretionary budget request of $5.486 billion. The 
R&D request consisted of $490 million for research (66.5%), $85 million for development 
(11.5%), and $162 million for R&D equipment (22.0%). Excluding equipment, about $412 
million (71.6%) of the R&D request would have funded intramural programs and $163 million 
(28.3%) would have funded extramural programs.72 
                                                 
70 This section was written by Harold F. Upton, Analyst in Natural Resources Policy, CRS Resources, Science, and 
Industry Division. 
71 “Reorganization Plan No. 4 of 1970,” 35 Fed. Reg. 15627-15630, October 6, 1970; also, see 
http://www.lib.noaa.gov/noaainfo/heritage/ReorganizationPlan4.html. 
72 National Oceanic and Atmospheric Administration, National Oceanic and Atmospheric Administration FY 2012 
Budget Summary, National Oceanic and Atmospheric Administration, Washington, DC, February 2011, 
http://www.corporateservices.noaa.gov/nbo/fy12_bluebook/chapter7_Research_Development.pdf.  
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NOAA’s administrative structure has evolved into five line offices that reflect its diverse mission, 
including the National Ocean Service (NOS); National Marine Fisheries Service (NMFS); 
National Environmental Satellite, Data, and Information Service (NESDIS); National Weather 
Service (NWS); and Office of Oceanic and Atmospheric Research (OAR). In addition to NOAA’s 
five line offices, Program Support (PS), a cross-cutting budget activity, includes the Office of 
Marine and Aviation Operations (OMAO). NOAA’s FY2012 budget request proposed a budget 
neutral reorganization of its administrative structure by establishing a Climate Service (CS) line 
office. The conference agreement did not establish a NOAA Climate Service as requested by the 
Administration and recommended by the Senate.  
Table 12 provides R&D funding levels by line office for FY2010, FY2011, and the FY2012 
request.73  At this time R&D funding levels by NOAA line office for FY2012 (P.L. 112-55) are 
not available. NOAA discretionary funding totals are included in Table 12 to provide context in 
lieu of specific R&D funding levels. 
The NOAA Research Council, an internal body composed of scientific personnel, developed the 
current NOAA 5-Year Research Plan for 2008-2012. The plan identified the most pressing 
research challenges as a set of six overarching questions. NOAA’s research and development 
portfolio is structured around finding answers to these questions:74 
What factors, human and otherwise, influence ecosystem processes and impact our ability to 
manage marine ecosystems and forecast their future state? 
What is the current state of biodiversity in the oceans, and what impacts will external forces 
have on this diversity and how we use our oceans and coasts? 
What are the causes and consequences of climate variability and change? 
What improvements to observing systems, analysis approaches, and models will allow us to 
better analyze and predict the atmosphere, ocean, and hydrological land processes? 
How can the accuracy and warning times for severe weather and other high-impact 
environmental events be increased significantly? 
How are uncertainties in our analysis and predictions best estimated and communicated? 
                                                 
73 Stacy Dennery, Budget Analyst, NOAA Budget Office, e-mail, November 15, 2011. 
74 National Oceanic and Atmospheric Administration, National Oceanic and Atmospheric Administration FY 2012 
Budget Summary, National Oceanic and Atmospheric Administration, Washington, DC, February 2011, 
http://www.corporateservices.noaa.gov/nbo/fy12_bluebook/chapter7_Research_Development.pdf.  
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Table 12. NOAA R&D 
(in millions of dollars) 
FY2012 
FY2010  
FY2011 
FY2012  
Enacted 
NOAA Line Office 
Actual 
Enacted 
Request 
P.L. 112-55 
NOS $71.9 
$71.6 
$91.0 
n/a 
NMFS 54.6 
55.4 
84.0 
n/a 
OAR 
 
405.5 390.0 175.1  n/a 
CS N/A 
N/A 
246.5 
n/a 
NWS 41.2 
21.5 
34.1 
n/a 
NESDIS 25.7 
28.9 
28.4 
n/a 
OMAOa 85.8 
61.8 
77.8 
n/a 
Total R&Db 684.7 
629.2 
736.9 
n/a 
NOAA 
Total 
4,737.5 4,586.0 5,485.7 4,893.7 
Sources: Emily Larkin, NOAA Budget Office, e-mail, March 7, 2011. 
Notes: n/a=not available 
a.  All OMAO R&D funding is for equipment.  
b.  Totals may differ from the sum of the components due to rounding.   
National Aeronautics and Space Administration75 
The Administration requested $16.637 billion for NASA R&D in FY2012. This amount was an 
increase of 11.0% over the FY2011 enacted level of $14.991 billion. The House Appropriations 
Committee recommended $14.941 billion. The Senate Appropriations Committee recommended 
$15.885 billion. The final appropriation was $15.850 billion. For a breakdown of these amounts, 
as well as the amounts authorized for NASA in FY2012 by the NASA Authorization Act of 2010 
(P.L. 111-267), see Table 13. 
The increase in NASA R&D funding in FY2012, despite a decrease in funding for NASA as a 
whole, was made possible by the retirement of the space shuttles. The space shuttle program is 
classified as an operational expense, not R&D. The last shuttle flight was completed in July 
2011.76 
The Administration’s $5.017 billion request for NASA Science in FY2012 was a 2.0% increase 
from FY2011. The request included continuation of a global climate research initiative first 
proposed in FY2011 and support for the development and launch of several missions 
recommended by the National Academies in the 2007 decadal survey.77 An independent review of 
                                                 
75 This section was written by Daniel Morgan, Specialist in Science and Technology Policy, CRS Resources, Science, 
and Industry Division. 
76 The space shuttle program continued to receive an appropriation in FY2012, mostly to cover a shortfall in the defined 
benefit pension plan of the contractor that managed space shuttle operations. 
77 National Research Council, Earth Science and Applications from Space: National Imperatives for the Next Decade 
and Beyond, 2007, http://www.nap.edu/catalog/11820.html. 
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the James Webb Space Telescope (JWST) in October 2010 estimated that the project was 15 
months behind schedule and $1.4 billion over budget.78 The revised JWST program that NASA 
developed in response to this finding has an estimated total lifecycle cost of $8.835 billion and 
projects a launch date in 2018.79 The House committee recommended $4.499 billion for Science, 
including $100 million less than the request for Earth Science and no funding for JWST. The 
Senate committee recommended $5.100 billion, including $156 million more than the request for 
JWST, and recommended capping the development portion of the cost of JWST at $8 billion. The 
final appropriation was $5.090 billion, including the same amount as the Senate for JWST. The 
final bill capped the formulation and development cost of JWST at $8 billion. The conference 
report directed the Government Accountability Office to assess the JWST program continuously 
and provide annual reports on the program’s management, cost, schedule, and technical status. 
The request for Aeronautics was $569 million, an increase of 6.7% from FY2011. The request 
included increases for selected research topics, such as the effects of high-altitude ice crystals on 
aircraft, in categories identified by the 2010 authorization act (P.L. 111-267, §902). The requested 
funding for hypersonics was reduced and focused on foundational research. The House 
committee recommended the requested amount and supported NASA’s proposed shifts of 
emphasis within the program. The Senate committee recommended $501 million. The final 
appropriation was $570 million. 
For Space Technology, the Administration requested $1.024 billion. About half of this total ($497 
million) was for Crosscutting Space Technology Development (CSTD), a mostly new activity. 
The request for CSTD was comparable to the amount authorized for Space Technology in 
FY2012 by the 2010 authorization act ($486 million). Most of the remainder of the request for 
Space Technology was for two activities transferred from other accounts: Exploration Technology 
Development from the Exploration account and Small Business Innovation Research from the 
Cross-Agency Support account. The request proposed roughly doubling the funding for the 
transferred activities. The House committee recommended a total of $375 million for Space 
Technology. The House committee report stated that “NASA’s proposal to more than triple the 
size of this program over the course of two fiscal years is premature,” but that ongoing program 
planning during FY2012 “will put the program in a stronger position to seek additional resources 
in future requests.” The Senate committee recommended $637 million, including $210 million for 
CSTD. The Senate committee report expressed “regret” at “not being able to fund this promising 
new program more robustly.” The final appropriation was $575 million, to be “prioritized toward 
the continuation of ongoing programs and activities.” 
The Administration’s request for Exploration in FY2012 was $3.949 billion, a 0.5% increase over 
FY2011 but about 25% less than the authorized amount. Before passage of the final FY2011 
appropriation, the bulk of this account funded the Constellation program, including the Orion 
crew vehicle and the Ares I rocket for carrying humans into low Earth orbit and the heavy-lift 
Ares V cargo rocket and other systems needed for a human mission to the Moon. In FY2012, the 
account instead funds development of the Multipurpose Crew Vehicle (MPCV) and heavy-lift 
Space Launch System (SLS) mandated by the 2010 authorization act. Although this is a 
                                                 
78 Final report of the JWST Independent Comprehensive Review Panel, October 29, 2010, http://www.nasa.gov/pdf/
499224main_JWST-ICRP_Report-FINAL.pdf; and GAO, NASA: Assessments of Selected Large-Scale Projects, GAO-
11- 239SP, March 2011, http://www.gao.gov/new.items/d11239sp.pdf. 
79 S.Rept. 112-284, p. 254. Full details of the JWST replan are expected to be released in February 2012 as part of the 
FY2013 budget request. 
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substantial change, many elements of Orion and Ares are included in the MPCV and SLS. The 
Exploration request included $2.810 billion for MPCV and SLS in FY2012, compared with “not 
less than” $2.994 billion in the FY2011 appropriation and $4.050 billion for FY2012 in the 
authorization act. The request also included $850 million in FY2012 to help companies develop 
commercial crew transport services to low Earth orbit, compared with $307 million in FY2011 
and $500 million for FY2012 in the authorization act.80 The House committee recommended 
$3.645 billion for Exploration, including $3.045 billion for MPCV and SLS and $312 million for 
commercial crew. The Senate committee recommended $3.775 billion, including $3.000 billion 
for MPCV and SLS and $500 million for commercial crew. The final appropriation was $3.771 
billion, including $3.060 billion for MPCV and SLS and $406 million for commercial crew. The 
conference report directed NASA to develop “a set of science-based exploration goals; a target 
destination or destinations that will enable the achievement of those goals; a schedule for the 
proposed attainment of those goals; and a plan for any proposed collaboration with international 
partners.” 
The request for the International Space Station (ISS) was $2.842 billion, an increase of 4.7% from 
FY2011. The request included an additional $60 million for ISS research, as well as increased 
funding for crew and cargo transportation to and from orbit. Because of the retirement of the 
space shuttles in FY2011, transportation services in FY2012 will be obtained under contract with 
international partners and commercial providers. The House committee recommended $2.764 
billion for the ISS. The Senate committee recommended $2.804 billion. The final appropriation 
was $2.830 billion. 
Table 13. NASA R&D 
(in millions of dollars) 
FY2011 
FY2011
FY2012 
FY2012
FY2012
FY2012 
FY2012
 
Enacted  Op. Plan
Auth. 
Request 
House 
Senate 
Final 
Science 
$4,935.4  $4,919.7
$5,248.6
$5,016.8
$4,499.5 $5,100.0 $5,090.0
 Earth Science 
n/a 
1,721.9
1,944.5
1,797.4
1,697.3 1,765.5 1,765.7
 Planetary Science 
n/a 
1,449.2
1,547.2
1,540.7
1,498.5 1,500.4 1,500.4
 Astrophysics n/a 
1,109.5
1,109.3
682.7
682.3 
682.2 
672.0
 James Webb Space Telescopea —  —  — 373.7
0.0 
529.6 
529.6
 Heliophysics n/a 
639.2
647.6
622.3
621.4 
622.3 
622.3
Aeronautics 
533.9  533.5
584.7
569.4
569.4 501.0 569.9
Space 
Technology 
— 
—  486.0
1,024.2
374.6 637.0 575.0
Exploration 
3,800.7  3,928.6
5,252.3
3,948.7
3,645.4 3,775.0 3,770.8
 Human Exploration Capabilities 
2,994.0b 2,982.1
4,050.0
2,810.2
3,045.0 3,000.0 3,060.0
 Commercial Spaceflight 
n/a 
606.8
500.0
850.0
311.7 
500.0 
406.0
 Exploration R&D 
n/a 
339.7
702.3
288.5
288.7 
275.0 
304.8
International Space Station 
n/a 
2,713.6
2,952.2
2,841.5
2,764.2 
2,803.5 
2,830.0
Subtotal 
R&D 
n/a  12,095.4 14,523.8 13,400.6 11,853.1 12,816.5 12,835.7
Other NASA Programsc 
n/a  2,789.0
1,372.8
1,681.4
1,469.9 1,657.2 1,579.3
                                                 
80 Funding for Commercial Spaceflight in FY2011 also included $299 million to develop commercial cargo services. 
Congressional Research Service 
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Federal Research and Development Funding: FY2012 
 
FY2011 
FY2011
FY2012 
FY2012
FY2012
FY2012 
FY2012
 
Enacted  Op. Plan
Auth. 
Request 
House 
Senate 
Final 
Cross-Agency Supportd 
3,105.2  3,130.7
3,189.6
3,192.0
3,047.0 3,043.1 2,995.0
 Associated with R&D 
n/a 
2,544.1
2,914.2
2,836.1
2,710.8 
2,694.7 
2,666.9
 Associated with Other 
n/a 
586.6
275.4
355.9
336.2 
348.4 
328.1
Construction & Environ. C&Rd 393.5  432.8
363.8
450.4
423.6 422.0 390.0
 Associated with R&D 
n/a 
351.7
332.4
400.2
376.8 
373.7 
347.3
 Associated with Other 
n/a 
81.1
31.4
50.2
46.7 
48.3 
42.7
Total 
R&D 
n/a  14,991.2 17,770.3 16,636.9 14,940.7 15,884.9 15,849.8
Total 
NASA 
18,448.0  18,448.0 19,450.0 18,724.3 16,793.4 17,938.8 17,800.0
Source: FY2011 enacted from P.L. 112-10. FY2011 operating plan from NASA’s August 2011 operating plan. 
FY2012 authorized from P.L. 111-267. FY2012 request from NASA’s FY2012 congressional budget justification, 
http://www.nasa.gov/news/budget/. FY2012 House from H.R. 2596 as reported and H.Rept. 112-169. FY2012 
Senate from S. 1572 as reported and S.Rept. 112-78. FY2012 final from P.L. 112-55 and H.Rept. 112-284. 
Notes: Totals and subtotals may differ from the sum of their components due to rounding. FY2011 enacted 
amounts for some items are not available (n/a) because in most cases P.L. 112-10 did not specify how to al ocate 
funds below the account level. FY2012 House amounts are adjusted for the 0.1% general rescission (H.R. 2596, 
§543). The rescission of $30 million in unobligated prior-year funds in the House bill (H.R. 2596, §528(e)) and the 
final act (P.L. 112-55, §528(f)) is not shown here. 
a.  Included in Astrophysics prior to the FY2012 request. 
b.  P.L. 112-10 provided “not less than” $2,994.0 million for Human Exploration Capabilities. 
c.  Space Shuttle, Space and Flight Support, Education, and Inspector General. 
d.  Al ocation between R&D and non-R&D is estimated by CRS in proportion to the underlying program 
amounts in order to al ow calculation of a total for R&D. The Cross-Agency Support and Construction and 
Environmental Compliance and Remediation accounts consist mostly of indirect costs for other programs, 
assessed in proportion to their direct costs. 
Department of Agriculture81 
U.S. Department of Agriculture research and education activities are included in four 
organizations: the Agricultural Research Service (ARS), National Institute of Food and 
Agriculture (NIFA),82 Economic Research Service (ERS), and National Agricultural Statistics 
Service (NASS). The Administration’s FY2012 request included $2.594 billion for these 
activities, an increase of 0.3% over FY2011 funding of $2.586 billion. The House-passed funding 
level for these activities was $2.235 billion; the Senate-passed level was $2.539 billion. Final 
appropriations for FY2012 provided for in the Consolidated and Further Appropriations Act, 
FY2012 (P.L. 112-55) was $2.533 billion, $60.6 million below the Administration’s request and 
$52.8 million below the FY2011 enacted level. For a breakdown of these amounts, see Table 14. 
The Agricultural Research Service is USDA’s in-house basic and applied research agency, and 
operates approximately 100 laboratories nationwide. The ARS also includes the National 
Agricultural Library, the primary information resource on food, agriculture, and natural resource 
                                                 
81 This section was written by Christine M. Matthews, Specialist in Science and Technology Policy, CRS Resources, 
Science, and Industry Division. 
82 NIFA was formerly the Cooperative State Research, Education, and Extension Service (CSREES). 
Congressional Research Service 
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Federal Research and Development Funding: FY2012 
 
sciences. The ARS laboratories focus on efficient food and fiber production, development of new 
products and uses for agricultural commodities, development of effective biocontrols for pest 
management, and support of USDA regulatory and technical assistance programs. The President 
requested $1.138 billion for ARS in FY2012, slightly above the FY2011 enacted level. The 
FY2012 appropriation provides $1.095 billion for the ARS, $38.6 million below the FY2011 
enacted level and $43.1 million below the request. The conference report supports the closure of 
12 research laboratories at ten locations and directs ARS to submit a report to the House and 
Senate Appropriation Committees no later than January 20, 2012, concerning the disposition of 
these laboratories. Neither the FY2011 continuing resolution nor the FY2012 appropriation 
provide funding for ARS buildings and facilities. 
In FY2012, funding from discontinued ARS projects will be redirected to agency research 
priorities including the conversion of agricultural products into biobased products and biofuels; 
development of production systems to provide a sustainable balance of crop production, carbon 
soil sequestration, and net greenhouse gas emissions; development of new measures to control 
bovine tuberculosis and bovine respiratory diseases; domestic and global market opportunities; 
new varieties and hybrids of feedstocks; and new healthier foods with decreased caloric density. 
Other areas of support include funding for research on non-traditional agents and their possible 
use in food, and for epidemiological and ecologic studies. In addition, the FY2012 appropriation 
includes support for research at Regional Biofuels Feedstocks Research and Demonstration 
Centers and for research to develop integrated, sustainable management systems to improve food 
production and security.   
The National Institute of Food and Agriculture was established in Title VII, §7511 of the Food, 
Conservation, and Energy Act of 2008 (P.L. 110-246, also known as the 2008 farm bill). In the 
FY2012 appropriation, NIFA is to support larger and longer-term research efforts on issues 
related to the viability of agriculture. NIFA is responsible for developing partnerships between the 
federal and state components of agricultural research, extension, and institutions of higher 
education. NIFA distributes funds to State Agricultural Experiment Stations, State Cooperative 
Extension Systems, land-grant universities, and other institutions and organizations that conduct 
agricultural research, education, and outreach. Included in these partnerships is funding for 
research at 1862 land-grant institutions, 1890 historically black colleges and universities, 1994 
tribal land-grant colleges, and Hispanic-serving institutions. Funding is distributed to the states 
through competitive awards, statutory formula funding, and special grants. The FY2012 
appropriation provides $1.202 billion for NIFA, $12.3 million (-1.0%) below the FY2011 enacted 
level and approximately equal to the request. Conferees stated that they were not in agreement 
with the Administration’s request concerning the termination of extramural research. Conferees 
also expressed concern about the focus of research programs supported through the AFRI and 
maintained that USDA’s support should be directed solely on the highest priority agricultural 
research as determined by Congress.   
One of the stated primary goals in the President’s FY2012 request was for NIFA to emphasize and 
prioritize competitive, peer-reviewed allocation of research funding. For this reason, the 
Administration requested funding for the development of new grant management tools. Funding 
for FY2012 includes support for grant management, as well as for programs that are more 
responsive to critical national issues such as agricultural security, local and regional emergencies, 
zoonotic diseases, climate change, childhood obesity, pest risk management, and development of 
biofuels that contribute to agricultural productivity and sustainability. The act also provides 
funding for programs that support minority-serving institutions and their recipients. 
Congressional Research Service 
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Federal Research and Development Funding: FY2012 
 
NIFA is responsible for administering the agency’s primary competitive research grants program, 
the Agriculture and Food Research Initiative (AFRI). In addition to supporting fundamental and 
applied science in agriculture, USDA maintains that the AFRI makes a significant contribution to 
developing the next generation of agricultural scientists by providing graduate students with 
opportunities to work on research projects. A focus of these efforts is to provide increased 
opportunities for minority and under-served communities in agricultural science. The FY2012 
appropriation provides $264.5 million for AFRI, approximately equal to its FY2011 enacted level. 
AFRI funding is to be directed towards alternative and renewable energy research to develop 
cost-effective feedstocks for biofuel production. Funding also includes support for global climate 
change research to develop mitigation capabilities for agricultural production; support for an 
integrated food safety research program that would have the potential for improving the 
understanding of disease-causing microorganisms; and funding for international food security and 
nutrition and obesity prevention research. The act supports initiatives in agricultural genomics, 
emerging issues in food and agricultural security, the ecology and economics of biological 
invasions, and plant biotechnology. In addition, it is anticipated that water research will extend 
beyond water quality to include water availability, reuse, and conservation. 
The FY2012 appropriation provides $77.7 million for the Economic Research Service, $8.3 
million below the request and $4.1 million below the FY2011 enacted level. ERS supports 
economic and social science information analysis on agriculture, rural development, food, and the 
environment. ERS collects and disseminates data concerning USDA programs and policies to 
various stakeholders. The FY2012 appropriation provides continued support for the Organic 
Production and Market Data Initiative.   
Funding for the National Agricultural Statistics Service is at $158.6 million in the FY2012 
appropriation, $6.8 million below the request and $2.2 million above the FY2011 level. The 
FY2012 appropriation includes support for improving research efforts in analyzing the impacts of 
bioenergy production, and for examining concerns pertaining to feedstock storage, transportation 
networks, and commodity production. Other research areas receiving support include production 
and use of biomass materials; stocks and prices of distillers’ grains; and current and proposed 
ethanol production plants. FY2012 NASS funding provides for restoration of the chemical use 
data series on major row crops; post harvest chemical use; and alternating annual fruit, nuts, and 
vegetable chemical use. Funding is provided to support the third year of the 2012 Census of 
Agriculture’s five-year cycle, intended to measure trends and identify developments in the 
agricultural community. On October 4, 2011, NASS stated that it intended to reduce the 
frequency of its reports. Conferees directed NASS to revisit this decision, identify duplication in 
their reports and surveys by other programs, and release as many reports as possible.  
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Federal Research and Development Funding: FY2012 
 
Table 14. U.S. Department of Agriculture R&D 
(in millions of dollars) 
 
FY2010 
FY2011
FY2012   FY2012 
FY2012 
FY2012 
Actuala 
Enactedd 
Request 
Housee 
Senatef 
Enactedg 
Agricultural Research Service 
 
 
 
 
 
 
Product Quality/Value Added 
$105.0
 
107.0
 
 
 
Livestock Production 
81.0
 
75.0
 
 
 
Crop Production 
234.0
 
236.0
 
 
 
Food Safety 
108.0
 
114.0
 
 
 
Livestock Protection 
79.0
 
80.0
 
 
 
Crop Protection 
203.0
 
197.0
 
 
 
Human Nutrition 
86.0
 
89.0
 
 
 
Environmental Stewardship 
202.0
 
196.0
 
 
 
National Agricultural Library 
22.0
 
23.0
 
 
 
Repair, Maint., Trust Funds, & Other Programs 
74.0
 
39.0
 
 
 
Subtotal 1,194.0
1,133.2
1,137.7
995.3
1,094.6
1,094.6
Buildings and Facilities 
71.0
0.0
0.0
0.0
0.0
0.0
Total, ARS 
1,265.0
1,133.2
1,137.7
995.3
1,094.6
1,094.6
National Institute of Food and 
 
 
 
Agriculturea 
 
 
 
Hatch Act Formula 
215.0
236.8
204.0
207.0
236.3
236.3
Cooperative Forestry Research 
29.0
33.0
27.0
30.0
32.9
32.9
Earmarked Projects and Grants 
141.0
2.8
0.0
4.5
6.2
5.9
Agriculture & Food Research Initiative 
262.0
265.0
325.0
229.5
266.0
264.5
Federal Administration 
18.0
18.3
18.0
10.0
11.0
10.5
Higher Education Programsb 
48.0
51.0
43.0
40.2
66.8
67.4
Other Programs 
79.0
93.2
91.0
75.2
90.6
88.2
Subtotal, Research and Education Activities 
792.0
698.7
708.1
596.4
709.8
705.7
Extension Activities 
 
 
 
 
 
 
Smith-Lever Sections 3b&c 
298.0
295.0
283.0
259.2
295.8
294.0
Extension and Integrated Programs 
49.0
28.6
10.0
3.6
4.4
4.3
1890 Col eges, Tuskegee, & West Virginia State 
University Col eges 
91.0
66.2
91.0
52.7
46.0
62.3
Other Extension Programs 
57.0
90.3
83.0
95.7
132.0
114.6
Subtotal, Extension Activities  
495.0
479.1
466.8
411.2
478.2
475.2
Integrated Activities 
60.0
36.9
29.9
12.4
25.9
21.5
Mandatory and Other Programs  
139.0
0.0
(161.0)
0.0
0.0
0.0
Total, NIFAc 1,486.0
1,214.7
1,204.8
1,020.0
1,213.9
1,202.4
Economic Research Service 
82.0
81.8
86.0
70.0
77.7
77.7
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Federal Research and Development Funding: FY2012 
 
 
FY2010 
FY2011
FY2012   FY2012 
FY2012 
FY2012 
Actuala 
Enactedd 
Request 
Housee 
Senatef 
Enactedg 
National Agricultural Statistics Service 
162.0
156.4
165.4
149.5
152.6
158.6
Total, Research, Education, and 
Economics 2,995.0
2,586.1
2,593.9
2,234.8
2,538.8
2,533.3
Sources: U.S. Department of Agriculture, FY2012 Budget Summary and Annual Performance Plan; H.Rept. 112-
101; S.Rept. 112-73; H.Rept. 112-284; P.L. 112-55. 
Note: Totals and subtotals may differ from the sum of the components due to rounding. 
a.  Funding levels are contained in the U.S. Department of Agriculture FY2012 Budget Summary and Annual 
Performance Plan, February 2011. Formerly CSREES. NIFA was established in Title VII of the 2008 Farm Bill.  
b.  Higher Education includes capacity building grants, Hispanic-Serving Institution Education Grants Program, 
Two-Year Postsecondary, and Agriculture in the K-12 Classroom, Higher Education Challenge Grants, 
Improve the Quality of Life in Rural America, and others.  
c.  Program totals may or may not include set-asides (non-add) or contingencies. 
d.  These funding levels may differ from previously reported. Current funding levels are contained in H.R. 2112. 
e.  H.Rept. 112-101, to accompany H.R. 2112.  
f. 
S.Rept. 112-73, to accompany H.R. 2112. 
g.  P.L. 112-55, H.Rept. 112-284. 
Department of the Interior83 
The Administration has requested $779.2 million in R&D funding for the Department of the 
Interior (DOI) for FY2012, essentially the same as its FY2011 funding level of $779.6. (See 
Table 15.) The U.S. Geological Survey (USGS) is the most R&D-intensive agency in DOI, with 
approximately 59% of its FY2011 appropriations devoted to R&D activities; the Bureau of Ocean 
Energy Management, Regulation, and Enforcement (BOEMRE) ranked second in R&D intensity 
at DOI, with approximately 25% of its funding devoted to R&D. 
Funding for DOI R&D is generally included in line items that also include non-R&D funding. 
Therefore it is not possible to know precisely how much of the funding provided for in 
appropriations bills will be allocated to R&D unless funding is provided for at the full level of the 
request. In general, R&D funding levels are determined only after DOI agencies report on their 
allocation of appropriations. In January 2012, DOI provided detailed information to CRS on 
R&D funding levels for each of its agencies and for broad program areas; this data was used for 
the analysis in this section. However, in providing the information, DOI noted that, “The USGS 
realigned their disciplines in the 2012 budget and at the same time re-baselined their R&D to 
better align with A-11 definitions.” Accordingly, funding levels, differences, and percentage 
changes provided in this section are internally consistent but may differ from previously 
published data. 
                                                 
83 This section was written by John F. Sargent, Specialist in Science and Technology Policy, CRS Resources, Science, 
and Industry Division. 
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Federal Research and Development Funding: FY2012 
 
U.S. Geological Survey 
The Consolidated Appropriations Act, FY2012 (P.L. 112-74) provides USGS with $1.068 billion 
for FY2012, approximately the same as the Senate draft, $14 million (1.3%) above H.R. 2584 as 
reported from the House Committee on Appropriations, $50 million (4.9%) above the President’s 
request, but $16 million below the FY2011 estimated funding level (-1.5%).  All USGS funding is 
provided through the Surveys, Investigations, and Research (SIR) account; the Administration 
requested funds for a second account in FY2012, National Land Imaging, but no funds were 
provided.84  
USGS R&D is conducted under seven activity/program areas that constitute DOI’s Surveys, 
Investigations, and Research (SIR) portfolio: Ecosystems; Climate and Land Use Change; 
Energy, Minerals, and Environmental Health; Natural Hazards; Water Resources, Core Science 
Systems; and Administration and Enterprise Information.  
P.L. 112-74 provides $675.5 million in R&D funding for FY2012under the SIR account, $35.5 
million (5.5%) more than in FY2011 and $73.2 million (12.2%) more than the request. Compared 
to FY2011, funding for four SIR activity/program areas in FY2012 were cut: Energy, Minerals, 
and Environmental Health ($-3.2 million, -3.2%); Climate and Land Use Change (-$2.5 million, 
-2.4%); Natural Hazards (-$1.1 million, -1.0%), and Administration and Enterprise Information 
($0.1 million, -11.4%). Funding for three SIR activity/program areas was increased in FY2012: 
Water Resources ($12.2 million, 11.0%), Core Science Systems ($29.7 million, 58.8%), all of the 
increase accounted for the National Geospatial Program which increased by $34.7 million;85 and 
Ecosystems ($0.4 million, 0.3%). 
Other DOI Agencies 
The Bureau of Ocean Energy Management, Regulation, and Enforcement received the second 
largest increase in FY2012 DOI agency R&D funding at $63.3 million, an increase of $27.7 
million over FY2011 though $5.2 million less than the President’s request. Congress provided 
$16.6 million for the Bureau of Land Management in FY2012, the same as in FY2011, but $5.1 
million more than the President’s request. The Bureau of Reclamation received $12.0 million, 
$2.1 million less than in FY2011 and approximately equal to the request. R&D funding for the 
National Park Service increased by $4.6 million over FY2011 to $30.9 million, slightly higher 
than the request. The Fish and Wildlife Service received $48.5 million for R&D in FY2012, $1.5 
more than in FY2011 and $1.5 million less than the request.  
                                                 
84 The figures provided for DOI incorporate a 0.16% across-the-board rescission included in P.L. 112-74. 
85 According to the DOI budget office, the National Geospatial Program’s large nominal increases resulted from DOI’s 
reclassification of activities. In particular, the FY2012 funding figures include funding for activities not previously 
classified as R&D that are now classified as such. Private communication between CRS and the DOI budget office, 
January 24, 2012. 
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Federal Research and Development Funding: FY2012 
 
Table 15. Department of the Interior R&D 
(in millions of dollars) 
H.R. 2584 
Senate  
FY2012 
FY2011 
FY2012 
As 
Subcommittee 
Enacted 
 
(P.L. 112-10) 
Request 
Reported 
Draft 
 (P.L. 112-74) 
U.S. Geological Survey 
640.0 
607.2 
a a  675.5 
Bureau of Land Management 
16.6 
11.5 
a a 
16.6 
Bureau of Reclamation 
14.1 
12.2 
a a 
12.0 
National Park Service 
26.3 
30.7 
a a 
30.9 
Fish and Wildlife Service 
47.0 
49.0 
a a 
48.5 
Bureau of Ocean Energy Management, 
Regulation, and Enforcementb 35.6 
68.5 
a a 
63.3 
Total, DOI R&Dc 779.6 
779.2 
a 
a 
846.8 
Source: Unpublished data provided to CRS by the Department of the Interior. 
a.   R&D funding cannot be determined. 
b.  The agency was previously named the Minerals Management Service. 
c.   Totals may differ from the sum of the components due to rounding. 
Environmental Protection Agency86 
The U.S. Environmental Protection Agency (EPA), the regulatory agency responsible for carrying 
out a number of environmental pollution control laws, funds a broad portfolio of research and 
development (R&D) activities to provide scientific tools and knowledge to support decisions 
relating to preventing, regulating, and abating environmental pollution. Beginning in FY2006, 
EPA has been funded through the Interior, Environment, and Related Agencies appropriations 
bill. Most of EPA’s scientific research activities are funded within the agency’s Science and 
Technology (S&T) appropriations account. This account is funded by a “base” appropriation and 
a transfer from the Hazardous Substance Superfund (Superfund) account. These transferred funds 
are dedicated to research on more effective methods to clean up contaminated sites. 
Prior to enactment of the Consolidated Appropriations Act, 2012 (P.L. 112-74, H.R. 2055) on 
December 23, 2011, EPA and other departments and agencies funded within the Interior, 
Environment, and Related Agencies Appropriations bill were operating under a series of 
continuing resolutions sequentially extending FY2012 funding.87 
                                                 
86 This section was written by Robert Esworthy, Specialist in Environmental Policy, CRS Resources, Science, and 
Industry Division. For a broader overview of EPA’s FY2012 appropriations see, CRS Report R41896, Interior, 
Environment, and Related Agencies: FY2012 Appropriations, coordinated by Carol Hardy Vincent, and CRS Report 
R41979, Environmental Protection Agency (EPA) FY2012 Appropriations, by Robert Esworthy. 
87 As with other federal agencies funded under the 12 appropriations bills, at the onset of FY2012 EPA had operated 
under continuing resolutions (P.L. 112-33 and P.L. 112-36) sequentially extending funding from October 1, 2011, 
through November 18, 2011. In addition to providing final FY2012 appropriations for 3 of the regular appropriations 
bills, the Consolidated and Further Continuing Appropriations Act, 2012 (P.L. 112-55) enacted November 18, 2011, 
included a provision continuing appropriations for those federal agencies (including EPA) funded under the remaining 
9 appropriations bills through December 16, 2011. Two subsequent short term continuing resolutions just prior to 
(continued...) 
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Federal Research and Development Funding: FY2012 
 
Title II of Division E under P.L. 112-74 (H.R. 2055) provided $818.0 million for the EPA S&T 
account for FY2012 (does not include the 0.16% across-the-board rescission88), including 
transfers from the Hazardous Substance Superfund account. The total FY2012 enacted funding 
for the S&T account was $22.3 million (2.7%) below the FY2011 enacted appropriations of 
$840.3 million (including a 0.2% across-the-board rescission89). The appropriations for EPA’s 
S&T account included in P.L. 112-74 represents 9.7% of the total $8.46 billion included for the 
agency overall for FY2012. As indicated in Table 16 below, the FY2012 enacted appropriations 
were more than recommended in the Interior, Environment and Related Agencies FY2012 
Appropriations bill (H.R. 2584, H.Rept. 112-151) as reported by House Appropriations 
Committee on July 19, 2011, but less than the amounts recommended in a October 14, 2011, draft 
released jointly by the chairman and ranking Member of the Senate Appropriations Subcommittee 
on Interior, Environment, and Related Agencies,90 and in the President’s FY2012 budget request.  
In addition to funding priorities among the various EPA programs and activities, several recent 
and pending EPA regulatory actions91 were central to the debate on the FY2012 appropriations, 
including EPA scientific research in support of these actions. Actions under the Clean Air Act, in 
particular EPA controls on emissions of greenhouse gases, as well as efforts to address 
conventional pollutants from a number of industries, received much of the attention. Several 
actions under the Clean Water Act, Safe Drinking Water Act, and Resource Conservation and 
Recovery Act (RCRA), also received some attention. Congressional concerns regarding these 
issues were prominent areas of debate during oversight and deliberation of EPA’s S&T funding 
levels. Some Members expressed concerns related to these actions during hearings and markup of 
EPA’s FY2012 appropriations, and authorizing committees have been addressing EPA regulatory 
actions through hearings and legislation. 
P.L. 112-74 included several administrative and general provisions affecting EPA actions and 
authorities. For example, Division E, Title IV “General Provisions” in P.L. 112-74, included 
provisions specifying requirements and restrictions on the use of FY2012 funds for certain Clean 
Air Act regulatory actions and greenhouse gas emission reporting requirements (see sections 425, 
426, 427 and 432), and certain Clean Water Act permitting requirements associated with 
silvicultural activities (section 429). P.L. 112-74 includes fewer provisions than the more than 30 
provisions proposed in the Interior, Environment, and Related Agencies Appropriations bill H.R. 
2584 (H.Rept. 112-151) as reported by the House Committee on Appropriations on July 19, 
2011.92 Additional proposals to address EPA actions also represented a significant proportion of 
the roughly 250 amendments considered and pending prior to suspension of floor debate of 
                                                                  
(...continued) 
enactment of the FY2012 Consolidated Appropriations Act: P.L. 112-67 extended funding for one day through 
December 17, 2011, to allow for the Senate to consider and adopt the conference report; P.L. 112-68 extended funding 
through December 23, 2011, to give Congress time to prepare the FY2012 Consolidated Appropriations Act for the 
President’s consideration. See CRS Report RL30343, Continuing Resolutions: Latest Action and Brief Overview of 
Recent Practices, by Sandy Streeter. 
88 P.L. 112-74, Section 436, Title IV, Div. E. 
89 P.L. 112-10, Section 1119, Title I, Div. B. 
90 The Senate Appropriations Subcommittee on Interior, Environment, and Related Agencies draft bill for FY2012 and 
accompanying tables are available on the Committee website at http://www.appropriations.senate.gov/sc-interior.cfm.  
91 See CRS Report R41561, EPA Regulations: Too Much, Too Little, or On Track?, by James E. McCarthy and Claudia 
Copeland, for a discussion of selected EPA regulatory actions. 
92 CRS Report R41979, Environmental Protection Agency (EPA) FY2012 Appropriations, by Robert Esworthy, 
contains tables comparing EPA provisions contained in P.L. 112-74 with those proposed in H.R. 2584. 
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Federal Research and Development Funding: FY2012 
 
H.Rept. 112-151 on July 28, 2011.93 Along with the provisions contained in the FY2012 
Consolidated Appropriations law as enacted (P.L. 112-74), the Conference Report (H.Rept. 112-
331) included extensive language with regard to specific actions by EPA, in lieu of certain 
provisions proposed in the House Appropriations Committee-reported bill (H.R. 2584). With 
regard to EPA’s R&D, under the S&T account in H.Rept. 112-331 (p. 1072), the Conferees 
required specific refinements and modifications to EPA’s policies and practices for conducting 
assessments under the agency’s Integrated Risk Information System (IRIS). 
The Conferees accepted the reorganization of the budget presentation of certain program 
activities below the appropriations account level for FY2012 as proposed by the President,94 
including consolidation and modifications of line-items, making the FY2011 enacted levels not 
comparable to the reorganized line items as reflected in Table 16 below. Newly revised program 
areas within the S&T account include Clean Air and Climate; Research: Air, Climate and Energy; 
Research: Chemical Safety and Sustainability; and Research: Sustainability and Healthy 
Communities. As the table indicates, there was variability among the FY2012 enacted amounts, 
compared to the FY2012 proposals and the FY2011 enacted amounts. In those cases where 
FY2012 enacted amounts were the same as proposed for FY2012 and enacted for FY2011, the 
FY2012 enacted levels would be a decrease once the 0.16% across-the-board rescission is taken 
into account. The $23.0 million transfer  from the Superfund account included in P.L. 112-74 for 
FY2012, is the same as in both the House and Senate versions and as requested, but is $3.8 
million less than the $26.8 million transferred in FY2011. 
The activities funded within the S&T account include research conducted by universities, 
foundations, and other non-federal entities that receive EPA grants, and research conducted by the 
agency at its own laboratories and facilities. R&D at EPA headquarters and laboratories around 
the country, as well as external R&D, is managed primarily by EPA’s Office of Research and 
Development (ORD). A large portion of the S&T account funds EPA’s R&D activities managed 
by ORD, including the agency’s research laboratories and research grants. The account also 
provides funding for the agency’s applied science and technology activities conducted through its 
program offices (e.g., the Office of Water). Many of the programs implemented by other offices 
within EPA have a research component, but the research is not necessarily the primary focus of 
the program. 
The EPA S&T account incorporates elements of the former EPA Research and Development 
account, as well as a portion of the former Salaries and Expenses, and Program Operations 
accounts, which had been in place until FY1996.95 Because of the differences in the scope of the 
activities included in these accounts, apt comparisons before and after FY1996 are difficult. 
Although the Office of Management and Budget (OMB) reports96 historical and projected budget 
                                                 
93 House Congressional Record H5688-5693, July 28, 2011. The House considered H.R. 2584 from July 25, 2011, to 
July 28, 2011, but did not complete debate on the bill.  
94 U.S. EPA, Fiscal Year FY2012 Justification of Appropriation Estimates for the Committee on Appropriations: 
Science and Technology, http://www.epa.gov/planandbudget/FY_2012_CJ_VV_rev.pdf, PDF pp. 74-248. 
95 In recent years, EPA’s annual appropriations have been requested, considered, and enacted according to eight 
statutory appropriations accounts established by Congress during the FY1996 appropriations process. 
96 The Office of Management and Budget (OMB) reports R&D budget authority (BA) amounts in its Analytical 
Perspectives accompanying the annual President’s, for example, for EPA R&D, OMB reported actual BA of $590 
million for FY2010, $651 million proposed for FY2011, and $579 proposed for FY2012. See OMB, Fiscal Year 2011 
Budget of the United States: Analytical Perspectives – Special Topics/Research and Development pgs. 339-344,and 
Fiscal Year 2012 Budget of the United States: Analytical Perspectives – Special Topics/Research and Development 
(continued...) 
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authority (BA) amounts for R&D at EPA (and other federal agencies), OMB documents do not 
describe how these amounts explicitly relate to the requested and appropriated funding amounts 
for the many specific EPA program activities. The R&D BA amounts reported by OMB are 
typically significantly less than amounts appropriated/requested for the S&T account. (BA as 
reported by OMB is included in Table 16 below for purposes of comparison.) This is an 
indication that not all of the EPA S&T account funding is allocated to R&D.  
Some Members of Congress and other stakeholders have consistently raised concerns about the 
adequacy of funding for scientific research at EPA. The adequacy of funding for these activities 
has been part of a broader question about the adequacy of overall federal funding for a broad 
range of scientific research activities administered by multiple federal agencies. Some 
congressional policymakers, scientists, and environmental organizations have expressed concern 
about the downward trend in federal resources for scientific research over time. Central facets of 
this debate centers include the question of whether the regulatory actions of federal agencies are 
based on “sound science” and how scientific research is applied in developing federal policy. 
Some Members have also raised concerns that EPA’s scientific justifications for several of its 
rules and regulations have been scrutinized recently as a result of apprehensions regarding quality 
of data, lack of transparency and effective peer review, and other related research planning and 
process issues.97 
Table 16. Environmental Protection Agency S&T Account  
(in millions of dollars; FY2012 enacted amounts do not include the 0.16% across the board rescission) 
FY2011  
House 
Senate 
FY2012 
Enacted 
FY2012 
Reported 
Subcommittee 
Enacted  
Environmental Protection Agency 
(P.L. 112-10) 
Request 
H.R. 2584 
Draft 
(P.L. 112-74) 
Science and Technology Approps. 
 
 
 
Account 
 
 
Air Toxics and Quality 
$120.5 
— —  — — 
Clean Air and Climate 
— 
134.4 
120.1 
129.1 
124.6 
- Climate Protection Program 
— 
16.3 
16.3 
16.3 
16.3 
Climate Protection 
16.8 
— —  — — 
Enforcement 15.3 
15.3 
15.3 
15.3 
15.3 
Homeland Security 
46.2 
42.0 
42.0 
42.0 
42.0 
Indoor Air and Radiation 
1.3 
6.8 
6.8 
6.8 
6.8 
IT/Data Management/Security 
3.7 
4.1 
3.7 
3.7 
3.7 
Operations & Administration 
69.7 
76.5 
70.1 
75.5 
72.1 
Pesticide Licensing 
6.6 
6.8 
6.6 
6.6 
6.6 
Research: Air, Climate, and Energy 
— 
108.0 
93.0 
105.0 
99.0 
                                                                  
(...continued) 
pgs. 363-368, available at http://www.gpoaccess.gov/usbudget/browse.html. 
97 For example, see November 17, 2011, hearing held by the House Committee on Science, Space, and Technology, 
Subcommittee on Energy and Environment, entitled “Fostering Quality Science at EPA: The Need for Common Sense 
Reform,” http://science.house.gov/hearing/energy-and-environment-subcommittee-hearing-fostering-quality-science-
epa-perspectives. 
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FY2011  
House 
Senate 
FY2012 
Enacted 
FY2012 
Reported 
Subcommittee 
Enacted  
Environmental Protection Agency 
(P.L. 112-10) 
Request 
H.R. 2584 
Draft 
(P.L. 112-74) 
Research: Clean Air 
102.4 
— —  — — 
- Research: Global Change 
20.8 
— 
— 
— 
— 
Research: Safe and Sustainable Water 
117.3 
118.8 
108.5 
118.8 
113.7 
Research: National Priorities 
— 
— 
5.0 
— 
5.0 
Research: Human Health & Ecosystems 
243.9 
— —  — — 
Research: Chemical Safety and Sustainability 
— 
138.1 125.5  131.6 131.5 
- Research: Computational toxicology 
21.1 
21.2 
21.1 
21.1 
21.2 
- Research: Endocrine disruptor 
16.0 
16.9 
15.9 
15.9 
16.9 
- Research: Fellowships 
16.0 
17.3 
0.0 
Not specified 
Not specified 
Research: Land Protection 
13.4 
— —  — — 
Research: Sustainability 
25.5 
— —  — — 
Research: Pesticides and Toxics 
27.3 
— —  — — 
Research: Sustainable and Healthy 
— 
Communities 
171.0 154.3 
171.0
171.0 
Water: Human Health Protection 
3.8 
3.8 
3.8 
3.8 
3.8 
—Subtotal S&T Account Base 
Appropriations $813.5 
$825.6 
$754.6 
$809.1 
$795.0 
—Transfer in from Hazardous Substance 
Superfund Account 
$26.8  
$23.0 
$23.0 
$23.0 
$23.0 
Total Science and Technology  
$840.3 
$848.6 
$777.6 
$832.1 
$818.0 
R&D Budget Authority Reported by OMB  (CR) $590.0 est 
$579.0 est 
N/A 
N/A 
N/A 
Source: Prepared by CRS. FY2012 and FY2011 enacted amounts in the table are based on the Consolidated Appropriations 
Act, FY2012, P.L. 112-74, and the Conference Report (H.Rept. 112-331). The House Committee-reported and Senate draft 
proposals are based on the FY2012 Interior, Environment, and Related Agencies appropriations bill (H.R. 2584) as reported 
by the House Appropriations Committee July 19, 2011, and the accompanying report (H.Rept. 112-151), and the Senate Draft 
and accompanying table released October 14, 2011, by the chairman and ranking Member of the Senate Appropriations 
Subcommittee on Interior, Environment, and Related Agencies, http://www.appropriations.senate.gov/sc-interior.cfm. FY2011 
enacted amounts include the 0.2% across-the-board rescission. OMB amounts of R&D budget authority are as reported in 
Office of Management and Budget (OMB) Fiscal Year 2012 Budget of the United States: Analytical Perspectives—Special 
Topics/Research and Development pgs. 363-368, http://www.whitehouse.gov/sites/default/files/omb/budget/fy2012/assets/
topics.pdf. Totals may differ from the sum of the components due to rounding. N/A = not available. 
Department of Transportation98 
President Obama has requested $1.215 billion for Department of Transportation (DOT) R&D in 
FY2012, an increase of $146 million (13.7%) from the FY2010 enacted level. (See Table 17) 
Two DOT agencies—the Federal Highway Administration (FHWA) and the Federal Aviation 
                                                 
98 This section was written by John F. Sargent, Specialist in Science and Technology Policy, CRS Resources, Science, 
and Industry Division. 
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Administration (FAA)—account for most of the department’s R&D funding (79.4% in the 
FY2012 request). 
The President has requested $417 million for FAA R&D and R&D facilities in FY2012, an 
increase of $5 million (1.2%) from the FY2010 enacted level. The $190 million requested for 
Research, Engineering, and Development (RE&D) is essentially unchanged from the FY2010 
enacted level. Of these funds, $77 million ($5 million above the FY2010 level) is for the RE&D 
NextGen R&D portfolio which is focused on the use of alternative and renewable fuels for 
general aviation aircraft to reduce aviation’s effects on the environment. The Environmental and 
Energy program, including some NextGen research, would be funded at $35.8 million, with R&D 
focused on applications such as modeling environmental impacts of aviation and further 
advancing technologies that reduce aircraft noise and emissions. 99 
The FHWA would receive $548 million in R&D funding in FY2012 under the President’s request, 
an increase of $94.8 million (20.9%). Highway Research and Development funding would 
increase to $200.0 million, up $33.7 million (20.3%) from FY2010 funding of $166.3 million. 
Funding for Intelligent Transportation Systems R&D would increase to $96.1 million in FY2012, 
up $14.8 (18.1%) from its FY2010 funding level. The ITS Multi-modal Research Program and 
the Competitive University Transportation Center (UTC) Consortia would each receive $20 
million in FY2012. In addition, R&D funding for the State Planning and Research program would 
grow to $206.4 million in FY2012, up $23.4 million (12.8%) over FY2010. 
On November 17, 2011, Congress completed action on the Consolidated and Further Continuing 
Appropriations Act, 2012 (P.L. 112-55), and President Obama signed it into law two days later. 
This act incorporates, among other things, three regular appropriations bills, including, as 
Division C, the Transportation, Housing and Urban Development, and Related Agencies 
Appropriations Act, 2012. It is not possible to discern the total amount of R&D that is provided 
for in this act since R&D is incorporated in appropriations accounts that include more than just 
R&D. However, information can be gleaned from the law and accompanying conference report 
(H.Rept. 112-284) that provides some insights into DOT agencies’ R&D funding. For example, 
the act provides $167.6 million for the FAA’s Research, Engineering, and Development account, 
$22.9 million (-12.0%) less than the FY2010 level, and $22.4 million (-11.8%) less than the 
request. Airport technology research and airport cooperative research are funded at the FY2012 
request levels, $29.3 million and $15.0 million respectively.  The Office of the Secretary’s 
Transportation Planning, Research, and Development account is funded at $9.0 million in 
FY2012, $9.2 million (-50.5%) below the FY2010 level and $0.8 million (-8.4%) below the 
request. The Federal Railroad Administration’s Railroad Research and Development account is 
funded at $35.0 million, $2.6 million (-6.9%) less than the estimated FY2010 funding level and 
$5.0 (-12.5%) million less than the request. 
Last year, the Department of Defense and Full-Year Continuing Appropriations Act, 2011 (P.L. 
112-10) provided FY2011 funding for the Department of Transportation, including R&D. In 
general, the law appropriated funds to the agencies at the FY2010 level unless otherwise 
specified. In particular, the law reduced the FAA’s RE&D account by $20.5 million to $170 
million in FY2011. This reduced total FAA funding from $412 million in FY2010 to 
approximately $391 million in FY2011. The bill also reduced DOT’s Planning, Research and 
                                                 
99 Federal Highway Administration, U.S. Department of Transportation, Budget Estimates Fiscal Year2012, February 
2011. 
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Development account by $6 million from its FY2010 funding level. The level of detail in the law, 
however, did not allow for a complete assessment of how the specified changes affected overall 
agency and departmental R&D funding for FY2011. This report will be updated as more 
information becomes available from the department, agencies, or congressional committees. 
Table 17. Department of Transportation R&D 
(in millions of dollars) 
H.R. 2596 
H.R. 2112 
FY2010  
FY2011  
FY2012 
As 
As Passed 
FY2012 
 
Actual 
Estimate 
Request 
Reported 
by Senate 
Actual 
Federal Highway 
Administration 453 
492 
548 
a 
a 
a 
Federal Aviation 
Administration 412 
391 
417 
a 
a 
a 
Other DOT agencies 
204 
a 250 
a 
a 
a 
Total, DOT R&Db 
1,069 
a 
1,215 
a 
a 
a 
Source: DOT FY2011 agency budget justifications; unpublished tables provided by OMB to CRS in February 
2010; private communications between OMB and CRS.  
a.  R&D funding cannot be determined; figures for R&D funding for these agencies will be added to the table as 
additional information becomes available.  
b.  Totals may differ from the sum of the components due to rounding. 
 
Author Contact Information 
 
John F. Sargent Jr., Coordinator 
  John D. Moteff 
Specialist in Science and Technology Policy 
Specialist in Science and Technology Policy 
jsargent@crs.loc.gov, 7-9147 
jmoteff@crs.loc.gov, 7-1435 
Robert Esworthy 
  Wendy H. Schacht 
Specialist in Environmental Policy 
Specialist in Science and Technology Policy 
resworthy@crs.loc.gov, 7-7236 
wschacht@crs.loc.gov, 7-7066 
Heather B. Gonzalez 
  Pamela W. Smith 
Specialist in Science and Technology Policy 
Analyst in Biomedical Policy 
hgonzalez@crs.loc.gov, 7-1895 
psmith@crs.loc.gov, 7-7048 
Christine M. Matthews 
  Harold F. Upton 
Specialist in Science and Technology Policy 
Analyst in Natural Resources Policy 
cmatthews@crs.loc.gov, 7-7055 
hupton@crs.loc.gov, 7-2264 
Daniel Morgan 
   
Specialist in Science and Technology Policy 
dmorgan@crs.loc.gov, 7-5849 
 
 
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