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Although much progress has been made in achieving the ambitious goals that Congress 
established more than 35 years ago in the Clean Water Act (CWA) to restore and maintain the 
chemical, physical, and biological integrity of the nation’s waters, long-standing problems persist, 
and new problems have emerged. Water quality problems are diverse, ranging from pollution 
runoff from farms and ranches, city streets, and other diffuse or “nonpoint” sources, to toxic 
substances discharged from factories and sewage treatment plants. 
There is little agreement among stakeholders about what solutions are needed and whether new 
legislation is required to address the nation’s remaining water pollution problems. For some time, 
efforts to comprehensively amend the CWA have stalled as interests have debated whether and 
exactly how to change the law. Congress has instead focused legislative attention on enacting 
narrow bills to extend or modify selected CWA programs, but not any comprehensive proposals. 
For several years, the most prominent legislative water quality issue has concerned financial 
assistance for municipal wastewater treatment projects. House and Senate committees have 
approved bills on several occasions, but, for various reasons, no legislation has been enacted. At 
issue is how the federal government will assist states and cities in meeting needs to rebuild, 
repair, and upgrade wastewater treatment plants, especially in light of capital costs that are 
projected to be as much as $390 billion. In the 111th Congress, growing interest in increased 
investment in public works infrastructure—including wastewater—in order to stimulate the 
faltering U.S. economy is likely to bring greater attention to water infrastructure issues. 
Also likely to be of interest are programs that regulate activities in wetlands, especially CWA 
Section 404, which has been criticized by landowners for intruding on private land-use decisions 
and imposing excessive economic burdens. Environmentalists view this regulatory program as 
essential for maintaining the health of wetland ecosystems, and they are concerned about court 
rulings that narrowed regulatory protection of wetlands and about related administrative actions. 
Many stakeholders desire clarification of the act’s regulatory jurisdiction, but they differ on what 
solutions are appropriate. In the 110th Congress, committees held hearings on legislation intended 
to provide that clarification. 
Other issues discussed in this report that also could be of interest in the 111th Congress include 
implementation of current programs to manage nonpoint sources of pollution, as these are major 
contributors to water quality impairments across the country; and implementation of EPA rules 
governing discharges of wastes from large animal feeding operations. 
 
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Introduction ..................................................................................................................................... 1 
Legislative Issues in the 111th Congress .......................................................................................... 3 
Authorization of Water Infrastructure Funding......................................................................... 4 
Legislative Responses......................................................................................................... 7 
110th Congress..................................................................................................................... 8 
Regulatory Protection of Wetlands............................................................................................ 9 
Judicial Proceedings Involving Section 404 ..................................................................... 10 
Congressional Responses.................................................................................................. 12 
Other Clean Water Act Issues ........................................................................................................ 13 
Implementation of the BEACH Act ........................................................................................ 13 
Combined and Separate Sewer Overflows.............................................................................. 14 
Nonpoint Pollution Management ............................................................................................ 14 
Strategy Concerning Animal Feeding Operations................................................................... 15 
EPA’s Water Transfer Rule ...................................................................................................... 16 
Continuing Issue: Appropriations.................................................................................................. 17 
 
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Table 1. CWA Wastewater Treatment Funding................................................................................ 6 
 
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Author Contact Information .......................................................................................................... 17 
 
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Although much progress has been made in achieving the ambitious goals that Congress 
established more than 35 years ago to restore and maintain the chemical, physical, and biological 
integrity of the nation’s waters, long-standing problems persist, and new problems have emerged. 
Water quality problems are diverse, ranging from pollution runoff from farms and ranches, city 
streets, and other diffuse or “nonpoint” sources, to “point” source discharges of metals and 
organic and inorganic toxic substances from factories and sewage treatment plants. 
The principal law that deals with polluting activity in the nation’s streams, lakes, estuaries, and 
coastal waters is the Federal Water Pollution Control Act (P.L. 92-500, enacted in 1972), 
commonly known as the Clean Water Act, or CWA. It consists of two major parts: regulatory 
provisions that impose progressively more stringent requirements on industries and cities to abate 
pollution and meet the statutory goal of zero discharge of pollutants; and provisions that authorize 
federal financial assistance for municipal wastewater treatment plant construction. Both parts are 
supported by research activities, plus permit and enforcement provisions. Programs at the federal 
level are administered by the Environmental Protection Agency (EPA); state and local 
governments have major responsibilities to implement CWA programs through standard-setting, 
permitting, and enforcement.1 
The water quality restoration objective declared in the 1972 act was accompanied by statutory 
goals to eliminate the discharge of pollutants into navigable waters by 1985 and to attain, 
wherever possible, waters deemed “fishable and swimmable” by 1983. Although those goals have 
not been fully achieved, considerable progress has been made, especially in controlling 
conventional pollutants (suspended solids, bacteria, and oxygen-consuming materials) discharged 
by industries and sewage treatment plants. 
Progress has been mixed in controlling discharges of toxic pollutants (heavy metals, inorganic 
and organic chemicals), which are more numerous and can harm human health and the 
environment even when present in very small amounts—at the parts-per-billion level. Moreover, 
efforts to control pollution from diffuse sources, termed nonpoint source pollution (rainfall runoff 
from urban, suburban, and agricultural areas, for example), are more recent, given the earlier 
emphasis on “point source” pollution (discharges from industrial and municipal wastewater 
treatment plants). Overall, data reported by EPA and states indicate that 45% of river and stream 
miles assessed by states and 47% of assessed lake acres do not meet applicable water quality 
standards and are impaired for one or more desired uses.2 In 2006 EPA issued an assessment of 
streams and small rivers and reported that 67% of U.S. stream miles are in poor or fair condition 
and that nutrients and streambed sediments have the largest adverse impact on the biological 
condition of these waters.3 Approximately 95,000 lakes and 544,000 river miles in the United 
States are under fish-consumption advisories (including 100% of the Great Lakes and their 
connecting waters), due to chemical contaminants in lakes, rivers, and coastal waters, and one-
                                                 
1 For further information, see CRS Report RL30030, Clean Water Act: A Summary of the Law, by Claudia Copeland. 
2  U.S. Environmental Protection Agency, National Water Quality Inventory: Report to Congress, 2002 Reporting 
Cycle, EPA 841-R-07-001, October 2007, http://www.epa.gov/305b/2002report/. 
3  U.S. Environmental Protection Agency, Wadeable Streams Assessment: A Collaborative Survey of the Nation’s 
Streams, EPA 841-B-06-002, December 2006, http://www.epa.gov/owow/streamsurvey/. 
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third of shellfishing beds are closed or restricted, due to toxic pollutant contamination. Mercury is 
a contaminant of growing concern—as of 2003, 45 states had issued partial or statewide fish or 
shellfish consumption advisories because of elevated mercury levels. 
The last major amendments to the law were the Water Quality Act of 1987 (P.L. 100-4). These 
amendments culminated six years of congressional efforts to extend and revise the act and were 
the most comprehensive amendments since 1972. Authorizations of appropriations for some 
programs provided in P.L. 100-4, such as general grant assistance to states, research, and general 
EPA support authorized in that law, expired in FY1990 and FY1991. Authorizations for 
wastewater treatment funding expired in FY1994. None of these programs has lapsed, however, 
as Congress has continued to appropriate funds to implement them. EPA, states, industry, and 
other citizens continue to implement the 1987 legislation, including meeting the numerous 
requirements and deadlines in it. 
The Clean Water Act has been viewed as one of the most successful environmental laws in terms 
of achieving its statutory goals, which have been widely supported by the public, but lately some 
have questioned whether additional actions to achieve further benefits are worth the costs. 
Criticism has come from industry, which has been the long-standing focus of the act’s regulatory 
programs and often opposes imposition of new stringent and costly requirements. Criticism also 
has come from developers and property rights groups who contend that federal regulations 
(particularly the act’s wetlands permit program) are a costly intrusion on private land-use 
decisions. States and cities have traditionally supported water quality programs and federal 
funding to assist them in carrying out the law, but many have opposed CWA measures that they 
fear might impose new unfunded mandates. Many environmental groups believe that further fine-
tuning is needed to maintain progress achieved to date and to address remaining water quality 
problems. 
Initially following enactment of amendments in 1987, no major CWA legislative activity 
occurred. A comprehensive reauthorization bill opposed by the Clinton Administration and 
environmental groups passed the House in the 104th Congress (1995), but was not enacted. Since 
then, no comprehensive reauthorization legislation has been introduced, but beginning in the 106th 
Congress, a number of bills dealing with specific water quality issues and programs in the law 
have been enacted—especially, legislation to reauthorize several existing CWA programs.4 Since 
the 107th Congress, the dominant CWA issue has been water infrastructure financing—i.e., 
extension and modification of provisions of the act authorizing financial assistance for municipal 
wastewater treatment projects. House and Senate committees have approved bills, but none has 
been enacted. 
The remainder of this report discusses CWA issues likely to be of interest in the 111th Congress, 
beginning with discussion of two issues that are likely to be most prominent—water 
infrastructure funding, and regulatory protection of wetlands. It then briefly describes several 
other issues that could receive attention, either through oversight or legislation, including 
management of sewer overflows, implementation of the CWA’s nonpoint source pollution 
management program, and regulation of waste discharges from animal feeding operations. It 
concludes with a brief discussion of water quality appropriations. 
                                                 
4 For additional information on legislative activity since P.L. 100-4, see CRS Report RL33800, Water Quality Issues in 
the 110th Congress: Oversight and Implementation, by Claudia Copeland. 
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The year 2007 marked the 35th anniversary of passage of the Clean Water Act and 20 years since 
the last major amendments to the law. While, as noted, there has been measurable clean water 
progress as a result of the act, observers and analysts agree that significant water pollution 
problems remain. However, there is less agreement about what solutions are needed and whether 
new legislation is required. Several key water quality issues exist: evaluating actions to 
implement existing provisions of the law, assessing whether additional steps are necessary to 
achieve overall goals of the act that have not yet been attained, ensuring that progress made to 
date is not lost through diminished attention to water quality needs, and defining the appropriate 
federal role in guiding and paying for clean water infrastructure and other activities. For some 
time, efforts to comprehensively amend the act have stalled as interests have debated whether and 
exactly how to change the law. Many issues that might be addressed involve making difficult 
tradeoffs between impacts on different sectors of the economy, taking action when there is 
technical or scientific uncertainty, and allocating governmental responsibilities for implementing 
the law. 
These factors partly explain why Congress has recently favored focusing legislative attention on 
narrow bills to extend or modify selected CWA programs, rather than taking up comprehensive 
proposals. Other factors also have been at work. These include a general reluctance by most 
Members of Congress to address controversial environmental issues in view of the slim majorities 
held by political parties in the House and the Senate; and a lack of presidential initiatives on clean 
water issues (neither the Clinton nor the Bush Administration proposed CWA legislation). In 
addition, for some time after the terrorist attacks of September 11, 2001, Congress was more 
focused on security, terrorism, and Iraq war issues than on many other topics, including 
environmental protection. 
As a result of the 2006 mid-term elections and changed congressional leadership beginning in 
2007, many observers expected that the 110th Congress would pursue oversight of clean water and 
other environmental programs. Greater interest in environmental issues was apparent, but no 
comprehensive legislation was enacted. A particular legislative focus was water infrastructure 
financing legislation, specifically reauthorization of the act’s financial aid program (discussed 
next in this report). Also on the congressional agenda was consideration of the geographic reach 
of the Clean Water Act over the nation’s waters and wetlands, in light of court rulings—including 
two Supreme Court decisions—that have narrowed the law’s regulatory jurisdiction, but in ways 
that are somewhat unclear. 
The 2008 general and congressional elections have encouraged many policymakers and 
stakeholders to anticipate much greater attention to many environmental issues, including clean 
water, by the 111th Congress and the Obama Administration. The new Administration’s priorities 
in this area are not yet fully known, although during the 2008 presidential campaign, candidate 
Obama supported several issues, including preservation of wetlands, Great Lakes restoration 
legislation, water conservation, regulation of large animal feeding operations, and full funding of 
clean water infrastructure assistance programs. Funding for water infrastructure projects, 
discussed next in this report, is expected to receive early attention in the 111th Congress in light of 
growing interest in increased investment in public works projects—including wastewater—in 
order to stimulate the faltering U.S. economy. 
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Meeting the nation’s needs to build, upgrade, rebuild, and repair wastewater infrastructure is a 
significant element in achieving the Clean Water Act’s water quality objectives. The act’s 
program of financial aid for municipal wastewater treatment plant construction is a key 
contributor to that effort. Since 1972 Congress has provided more than $78 billion to assist cities 
in constructing projects to achieve the act’s requirements for secondary treatment of municipal 
sewage (equivalent to 85% reduction of wastes), or more stringent treatment where required by 
local water quality conditions. State and local governments have spent more than $25 billion of 
their own funds for construction, as well. 
Still, funding needs remain very high: an additional $202.5 billion nationwide for all types of 
projects eligible for funding under the act, according to the most recent Needs Survey estimate by 
EPA and the states, released in January 2008, an 8.6% increase above the estimate reported four 
years earlier.5 EPA reported several reasons for increased needs: problems due to aging 
infrastructure, treatment plant improvements needed to meet more protective water quality 
standards, and additional capacity required to handle wet weather flows. This current estimate 
includes $134.4 billion for wastewater treatment and collection systems ($10.5 billion more than 
the previous report), $54.8 billion for combined sewer overflow corrections ($1.5 billion less than 
the previous estimate), $9 billion for stormwater management ($2.8 billion more than the 
previous estimate), and $4.3 billion to build systems to distribute recycled water (a new category 
in this report). The estimate does not explicitly include funding needed to address security issues, 
needs related to growth and expansion in regions that are experiencing population growth, or 
funding possibly needed for treatment works to adapt to climate change impacts. 
In September 2002, EPA released a study called the Gap Analysis that assesses the difference 
between current spending for wastewater infrastructure and total funding needs (both capital and 
operation and maintenance).6 In that report, EPA estimated that, over the next two decades, the 
United States needs to spend nearly $390 billion to replace existing wastewater infrastructure 
systems and to build new ones. Funding needs for operation and maintenance (not eligible for 
Clean Water Act funding) are an additional $148 billion over the next two decades, the agency 
estimated. According to the Gap Analysis, if there is no increase in investment, there will be 
about a $6 billion gap between current annual capital expenditures for wastewater treatment ($13 
billion annually) and projected spending needs of approximately $19 billion. The study also 
estimated that, if wastewater spending were to increase by 3% annually (essentially meaning a 
doubling of rates paid by ratepayers), the gap would shrink by nearly 90% (to about $1 billion 
annually). At issue has been what the federal role should be in assisting states and cities, 
especially in view of such high projected funding needs. 
Debate over the nature of the nation’s efforts regarding wastewater infrastructure was a central 
and controversial part of the 1987 amendments to the act. The amendments extended through 
FY1990 the traditional Title II program of grants for sewage treatment project construction, under 
which the federal share was 55% of project costs. The 1987 law initiated a program of grants to 
capitalize State Water Pollution Control Revolving Funds (SRFs), which are loan programs, in a 
                                                 
5  U.S. Environmental Protection Agency, Clean Watersheds Needs Survey 2004, Report to Congress, Washington, 
January 2008, http://www.epa.gov/owm/mtb/cwns/2004rtc/toc.htm. 
6  U.S. Environmental Protection Agency, The Clean Water and Drinking Water Infrastructure Gap Analysis, EPA 
816-R-02-020, September 2002. 
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new Title VI. States are required to deposit an amount equal to at least 20% of the federal 
capitalization grant in the Fund established under Title VI. Under the revolving fund concept, 
monies used for wastewater treatment construction would be repaid by loan recipients to the 
states (repayment was not required for grants under the Title II program), to be recycled for future 
construction in other communities, thus providing an ongoing source of financing. The 
expectation in 1987 was that the federal contributions to SRFs would assist in making a transition 
to full state and local financing by FY1995. Although most states believe that the SRF is working 
well, early funding and administrative problems and continuing large funding needs have delayed 
the anticipated shift to full state responsibility. Thus, SRF issues have been prominent on the 
Clean Water Act reauthorization agenda in recent Congresses.7 
SRF monies may be used for specified activities, including making loans for as much as 100% of 
project costs (at or below market interest rates, including interest-free loans), to buy or refinance 
cities’ debt obligation, or as a source of revenue or security for payment of principal and interest 
on a state-issued bond. SRF monies also may be used to provide loan guarantees or credit 
enhancement for localities. Loans made by a state from its SRF are to be used first to assure 
progress towards the goals of the act and, in particular, on projects to meet the standards and 
enforceable requirements of the act. After states achieve those requirements of the act, SRF 
monies also may be used to implement nonpoint pollution management and national estuary 
programs. Since the SRF program began, states have used $2.6 billion to assist more than 8,650 
nonpoint management projects; none has gone to estuary management activities. 
All states have established the mechanisms to administer the new loan programs and have been 
receiving SRF capitalization funds under Title VI. Many have complained that the SRF program 
is unduly complicated by federal rules, even though Congress had intended that states were to 
have greater flexibility. Congressional oversight has examined the progress toward reducing the 
backlog of wastewater treatment facilities needed to achieve the act’s water quality objectives, 
while newer estimates of future funding needs have drawn increased attention to the role of the 
SRF program in meeting such needs. Although there has been some criticism of the SRF 
program, and debate continues over specific concerns, the basic approach is well supported. 
Congress used the clean water SRF as the model when it established a drinking water SRF in 
1996 (P.L. 104-182).8 
Although the initial intent was to phase out federal support for this program, Congress has 
continued to appropriate SRF capitalization grants to the states, providing an average of $1.35 
billion annually in recent years, but that amount has been declining since FY2005. Table 1 
summarizes wastewater treatment funding under Title II (traditional grants program) and Title VI 
(capitalization grants for revolving loan programs) since the 1987 amendments. This table does 
not include appropriations for congressionally earmarked special project grants in individual 
cities, which in recent years have represented about 15% of water infrastructure funds.9 
                                                 
7 For further information on the clean water SRF program, see CRS Report 98-323, Wastewater Treatment: Overview 
and Background, by Claudia Copeland. 
8 For additional information, see CRS Report RS22037, Drinking Water State Revolving Fund (DWSRF): Program 
Overview and Issues, by Mary Tiemann. 
9 Issues associated with special project grants are discussed in CRS Report RL32201, Water Infrastructure Projects 
Designated in EPA Appropriations: Trends and Policy Implications, by Claudia Copeland. 
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Table 1. CWA Wastewater Treatment Funding 
(billions of dollars) 
Authorizations Appropriations 
Fiscal Year 
Title II 
Title VI 
Title II 
Title VI 
1986 
2.400 —  1.800 — 
1987 
2.400 —  2.360 — 
1988 
2.400 —  2.300 — 
1989 
1.200 1.200 0.941 0.941 
1990 
1.200 1.200 0.967 0.967 
1991 
— 2.400 — 2.100 
1992 
— 1.800 — 1.950 
1993 
— 1.200 — 1.930 
1994 
— 0.600 — 1.220 
1995 — 
— 
— 
1.240 
1996 — 
— 
— 
2.070 
1997 — 
— 
— 
0.625 
1998 — 
— 
— 
1.350 
1999 — 
— 
— 
1.350 
2000 — 
— 
— 
1.345 
2001 — 
— 
— 
1.350 
2002 — 
— 
— 
1.350 
2003 — 
— 
— 
1.341 
2004 — 
— 
— 
1.342 
2005 — 
— 
— 
1.091 
2006 — 
— 
— 
0.887 
2007 — 
— 
— 
1.084 
2008 — 
— 
— 
0.689 
TOTAL 7.200 
8.400 
6.568 
26.222 
Source: Compiled by CRS. 
One issue of continuing interest is impacts on small communities. These entities in particular 
have found it difficult to participate in the SRF loan program, since many are characterized by 
narrow or weak tax bases, limited or no access to capital markets, lower relative household 
incomes, and higher per capita needs. They often find it harder to borrow to meet their capital 
needs and pay relatively high premiums to do so. Meeting the special needs of small towns, 
through a reestablished grant program, other funding source, or loan program with special rules, 
has been an issue of interest to Congress. 
Because remaining clean water funding needs are still so large nationally, at issue is whether and 
how to extend SRF assistance to address those needs, how to allocate SRF funds among the 
states, and how to prioritize projects and funding. Additionally, there is concern about the 
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adequacy of SRF or other funding specifically for high-cost projects dealing with problems of 
overflows from municipal combined and separate sewers which can release partially treated or 
untreated wastewaters that harm public health and the environment. EPA estimates that the cost of 
projects to control sewer overflows, from combined and separate sanitary sewer systems, and 
manage stormwater runoff, is nearly $64 billion nationwide. And more recently, wastewater 
utilities have sought assistance to assess operational vulnerabilities and upgrade physical 
protection of their facilities against possible terrorist attacks that could threaten the water 
infrastructure system.10 
During the Bush Administration, EPA officials took the position that infrastructure funding needs 
go beyond what the federal government can do on its own, and the President’s budget for several 
years advanced the concept that federal funding would cease after 2011 and that state and local 
self-financing would occur thereafter. Although saying that federal and state funding can help 
water utilities meet future needs, EPA’s principal water infrastructure initiative was to support 
other types of responses to help ensure that investment needs are met in an efficient, timely, and 
equitable manner. In particular, EPA promoted strategies that it terms the Four Pillars of 
Sustainable Infrastructure, based on concepts of better management, full-cost pricing, efficient 
water use, and watershed approaches to protection. EPA pursued a Sustainable Infrastructure 
Leadership Initiative in partnership with water utilities to promote the Four Pillars. The purpose 
of the initiative was to identify new and better ways of doing business in the water and 
wastewater industries and promote them widely, and thus ensure sustainability of water systems. 
For example, EPA worked to encourage rate structures that lead to full cost pricing and will 
support water metering and other conservation measures. EPA also has encouraged consumers to 
use water-efficient products (e.g., residential bathroom products), with the intent of reducing 
national water and wastewater infrastructure needs by reducing projected water demand and 
wastewater flow, thus allowing deferral or downsizing of capital projects. 
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Congress has considered water infrastructure funding issues several times since the 107th 
Congress. In that Congress, House and Senate committees approved bills to extend the act’s SRF 
program and increase federal assistance (H.R. 3930; S. 1961). The Senate bill was reported, but a 
report on H.R. 3930 was not filed; neither bill received further action. 
In the 108th Congress, bills to reauthorize the Clean Water Act SRF program were introduced, as 
were separate bills to reauthorize funding for sewer overflow grants (CWA Section 221). The 
Senate Environment and Public Works Committee reported legislation authorizing $41.25 billion 
over five years for wastewater and drinking water infrastructure programs, including $20 billion 
for the clean water SRF program (S. 2550). In addition, the House Transportation and 
Infrastructure Subcommittee on Water Resources and Environment approved H.R. 1560 
(legislation similar to H.R. 3930, the bill approved by that committee in the 107th Congress), but 
no further action occurred. 
In the 109th Congress, the Senate Environment and Public Works Committee approved S. 1400, 
the Water Infrastructure Financing Act, in July 2005. The bill was similar to S. 2550 in the 108th 
                                                 
10 For additional information on many of these topics, see CRS Report RL31116, Water Infrastructure Needs and 
Investment: Review and Analysis of Key Issues, by Claudia Copeland and Mary Tiemann. 
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Congress. No further action occurred on this bill, and there was no legislative activity in the 
House on similar legislation during the 109th Congress. 
Throughout this period, several factors have contributed to problems in moving any of these bills 
further in the legislative process, including Administration opposition to authorization levels, 
disputes over the formula for allocating clean water SRF grants among the states, and 
controversies over application of prevailing wage requirements of the Davis-Bacon Act. 
The issue of the applicability of the Davis-Bacon Act to SRF-funded projects has been especially 
controversial, because that act has both strong supporters and critics in Congress and elsewhere. 
Critics of Davis-Bacon say that it unnecessarily increases public construction costs and hampers 
competition, while supporters say that it helps stabilize the local construction industry by 
preventing competition that would undercut local wages and working conditions. Under the 
original SRF program authorization enacted in 1987, the Davis-Bacon Act applied to so-called 
“first use” monies provided by a state from its SRF (that is, loans made from initial federal 
capitalization grants, but not to subsequent monies provided from repayments to the SRF). When 
that authorization expired at the end of FY1994, Davis-Bacon requirements also expired. Thus, 
the recent issue has been whether to restore the applicability of those requirements.11 
For some time, interest has been growing in identifying and developing new mechanisms to help 
localities pay for water infrastructure projects, beyond federal grants or SRFs, which appear 
insufficient to fully meet funding needs. In June 2005, the House Transportation and 
Infrastructure Subcommittee on Water Resources and Environment held hearings on alternative 
means to fund water infrastructure projects in the future. At the first hearing, witnesses focused 
on one way to increase funding for water infrastructure that has recently been advocated by some 
groups, creating a national clean water trust fund that would conceptually be similar to trust funds 
that exist for highway and aviation projects. Witnesses and subcommittee members discussed 
difficulties in identifying potential revenue sources that would be deemed fair and equitable. The 
second hearing addressed other financing options, such as expanded use of tax-exempt private 
activity bonds, and more efficient management techniques, such as asset management programs 
and sustainable infrastructure initiatives. In the 109th Congress, legislation was introduced to 
establish a $7.5 billion federal trust fund for wastewater infrastructure improvements. This bill, 
H.R. 4560, proposed to use a concept for funding such projects that has been promoted by 
wastewater treatment industry officials, other stakeholders, and some environmentalists, who 
argue it could provide a new source of money for necessary system upgrades amid dwindling 
federal funds. The bill contemplated a system of user fees to create the fund, but the source of 
revenue was not specified in the bill. Congress did not act on this proposal, and no similar 
legislation has been introduced subsequently. 
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Wastewater infrastructure financing again received attention in the 110th Congress. In March 2007 
the House approved three bills; however, the Senate did not act on any of them. H.R. 720, the 
Water Quality Financing Act of 2007, was substantially similar to legislation that the House 
Transportation and Infrastructure Committee’s Water Resources and Environment Subcommittee 
approved in the 108th Congress (H.R. 1560). It would have authorized $14 billion for the clean 
                                                 
11 For additional information, see CRS Report RL31491, Davis-Bacon Act Coverage and the State Revolving Fund 
Program Under the Clean Water Act, by William G. Whittaker. 
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water SRF program for FY2008-FY2011. It included several provisions intended to benefit 
economically disadvantaged and small communities, such as allowing extended loan repayments 
(30 years, rather than 20) and additional subsidies (e.g., principal forgiveness and negative 
interest loans) for communities that meet a state’s affordability criteria. One key difference 
between this bill and the earlier legislation was the specification in H.R. 720 that the Davis-Bacon 
Act prevailing wage requirement shall apply to all projects financed in whole or in part through 
an SRF. 
The House also passed H.R. 569, a bill to reauthorize CWA Section 221 and to provide funding 
for projects to correct municipal sewer overflows; and H.R. 700, a bill to reauthorize CWA 
Section 220 and to extend a pilot program to develop alternative water source projects (i.e., 
projects to meet critical water supply needs). 
The Senate Environment and Public Works Committee held an oversight hearing on wastewater 
infrastructure needs in September 2007 and later took up a specific legislative proposal dealing 
with financing issues. In September 2008, the committee approved the Water Infrastructure 
Financing Act (S. 3617), a bill that was similar to a measure that the committee approved in the 
109th Congress (S. 1400). S. 3617 would have authorized $19.6 billion for grants to capitalize the 
Clean Water Act SRF program and $14.7 billion for Safe Drinking Water Act SRF capitalization 
grants through FY2012. The bill would have expanded eligibility for clean water SRF assistance 
including, for example, projects that implement stormwater management, water conservation or 
efficiency projects, and water and wastewater reuse and recycling projects; and it included a 
number of provisions to make the clean water and drinking water SRF programs more parallel, 
such as allowing SRF assistance to be used by private as well as public wastewater treatment 
systems. The committee approved an amendment adding Davis-Bacon Act language similar to 
that in House-passed H.R. 720, specifying that prevailing wage requirements shall apply to all 
projects financed in whole or in part through an SRF. 
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How best to protect the nation’s remaining wetlands and regulate activities taking place in 
wetlands has become one of the most contentious environmental policy issues, especially in the 
context of the CWA, which contains a key wetlands regulatory tool, the permit program in 
Section 404. It requires landowners or developers to obtain permits for disposal of dredged or fill 
material that is generated by construction or similar activity into navigable waters of the United 
States, including wetlands. Section 404 has evolved through judicial interpretation and regulatory 
change to become one of the principal federal tools used to protect wetlands, although that term 
appears only once in Section 404 itself and is not defined there. At the same time, its 
implementation has come to be seen as intrusive and burdensome to those whose activities it 
regulates. At issue today is how to address criticism of the Section 404 regulatory program while 
achieving desired goals of wetlands protection.12 
Unlike the rest of the act, the permit aspects of Section 404 are administered by the U.S. Army 
Corps of Engineers, rather than EPA, although the Corps uses EPA environmental guidance. 
Other federal agencies including the U.S. Fish and Wildlife Service (FWS) and Natural Resource 
Conservation Service (NRCS) have more limited roles in the Corps’ permitting decisions. Tension 
                                                 
12 For additional information, see CRS Report RL33483, Wetlands: An Overview of Issues, by Claudia Copeland. 
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has existed for many years between the regulation of activities in wetlands under Section 404 and 
related laws, on the one hand, and the desire of landowners to develop property that may include 
wetlands, on the other hand. The conflicts over wetlands regulation have for the most part 
occurred in administrative proceedings, as Congress has not amended Section 404 since 1977, 
when it provided exemptions for categories of routine activities, such as normal farming and 
forestry. Controversy has grown over the extent of federal jurisdiction and impacts on private 
property, burdens and delay of permit procedures, and roles of federal agencies and states in 
issuing permits. 
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One issue involving long-standing controversy and litigation is whether isolated waters are 
properly within the jurisdiction of Section 404. Isolated waters—wetlands which are not 
physically adjacent to navigable surface waters—often appear to provide only some of the values 
for which wetlands are protected, such as flood control or water purification, even if they meet 
the technical definition of a wetland. 
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On January 9, 2001, the Supreme Court ruled on the question of whether the CWA provides the 
Corps and EPA with authority over isolated waters. The Court’s 5-4 ruling in Solid Waste Agency 
of Northern Cook County (SWANCC) v. U.S. Army Corps of Engineers (531 U.S. 159 (2001)) 
held that the Corps’ denial of a 404 permit for a disposal site on isolated wetlands solely on the 
basis that migratory birds use the site exceeds the authority provided in the act. 
The full extent of impacts on the regulatory program resulting from this decision remains unclear, 
even eight years after the ruling, in part because of different interpretations of SWANCC reflected 
in subsequent federal court cases. While it continues to be difficult to fully assess how regulatory 
protection of wetlands will be affected as a result of the SWANCC decision and other possible 
changes, the remaining responsibility to protect affected wetlands falls on states and localities.13 
Environmentalists believe that the Court misinterpreted congressional intent on the matter, while 
industry and landowner groups welcomed the ruling. Policy implications of how much the 
decision restricts federal regulation depend on how broadly or narrowly the opinion is applied. 
Some federal courts have interpreted SWANCC narrowly, thus limiting its effect on current permit 
rules, while a few read the decision more broadly. 
The government’s view on this key question was expressed in EPA-Corps guidance issued in 
January 2003. It provides a legal interpretation essentially based on a narrow reading of the 
Court’s decision, thus allowing federal regulation of some isolated waters to continue, but it calls 
for more headquarters review in disputed cases. Administration press releases said that the 
guidance demonstrates the government’s commitment to “no-net-loss” wetlands policy. However, 
it is apparent that the issues remained under review, because at the same time, the Administration 
issued an advance notice of proposed rulemaking (ANPRM) seeking comment on how to define 
waters that are under jurisdiction of the regulatory program.14 The ANPRM did not actually 
                                                 
13 For additional information, see CRS Report RL30849, The Supreme Court Addresses Corps of Engineers 
Jurisdiction Over “Isolated Waters”: The SWANCC Decision, by Robert Meltz. 
14  U.S. Department of Defense, Department of the Army, Corps of Engineers and U.S. Environmental Protection 
Agency, “Advance Notice of Proposed Rulemaking on the Clean Water Act Regulatory Definition of ‘Waters of the 
(continued...) 
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propose rule changes, but it indicated possible ways that Clean Water Act rules might be modified 
to further limit federal jurisdiction, building on SWANCC and some subsequent legal decisions. 
The government received more than 133,000 comments on the ANPRM, most of them negative, 
according to EPA and the Corps. Environmentalists and many states opposed changing any rules, 
saying that the law and previous court rulings call for the broadest possible interpretation of the 
Clean Water Act (and thus a narrow interpretation of SWANCC), but developers sought changes to 
clarify interpretation of SWANCC. In December 2003, EPA and the Corps announced that the 
Administration would not pursue rule changes on federal regulatory jurisdiction over isolated 
wetlands. The EPA Administrator said that the Administration wanted to avoid a contentious and 
lengthy rulemaking debate over the issue. Environmentalists and state representatives expressed 
relief at the announcement. Interest groups on all sides have been critical of confusion in 
implementing the 2003 guidance, which constitutes the main tool for interpreting the reach of the 
SWANCC decision. Environmentalists remain concerned about diminished protection resulting 
from the guidance, while developers said that without new regulations, confusing and 
contradictory interpretations of wetland rules will continue. 
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Federal courts continue to have a key role in interpreting and clarifying the SWANCC decision. 
On February 21, 2006, the Supreme Court heard arguments in two cases brought by landowners 
(Rapanos v. United States; Carabell v. U.S. Army Corps of Engineers) seeking to narrow the 
scope of the CWA permit program as it applies to development of wetlands. The issue in both 
cases had to do with the reach of the CWA to cover “waters” that were not navigable waters, in 
the traditional sense, but were connected somehow to navigable waters or “adjacent” to those 
waters. (The act requires a federal permit to discharge dredged or fill materials into “navigable 
waters.”) Many legal and other observers hoped that the Court’s ruling in these cases would bring 
greater clarity about the scope of federal jurisdiction. 
The Court’s ruling was issued on June 19, 2006 (Rapanos, v. United States, 547 U.S. 715 (2006)). 
In a 5-4 decision, a plurality of the Court, led by Justice Scalia, held that the lower court had 
applied an incorrect standard to determine whether the wetlands at issue are covered by the CWA. 
Justice Kennedy joined this plurality to vacate the lower court decisions and remand the cases for 
further consideration, but he took different positions on most of the substantive issues raised by 
the cases, as did four other dissenting justices.15 Legal observers suggest that the implications of 
the ruling (both short-term and long-term) are far from clear. Because the several opinions written 
by the justices did not draw a clear line regarding which wetlands and other waters are subject to 
federal jurisdiction, one likely result has been more case-by-case determinations and continuing 
litigation. There also has been renewed pressure on the Corps and EPA to clarify the issues 
through an administrative rulemaking. 
On June 5, 2007—nearly one year after the Rapanos ruling—EPA and the Corps issued guidance 
to enable their field staffs to make CWA jurisdictional determinations in light of the decision. 
According to the guidance, the agencies will assert regulatory jurisdiction over certain waters, 
                                                                 
(...continued) 
United States’ and Joint Memorandum,” 63 Federal Register 1991-1998, January 15, 2003. 
15 For additional information, see CRS Report RL33263, The Wetlands Coverage of the Clean Water Act Is Revisited 
by the Supreme Court: Rapanos v. United States, by Robert Meltz and Claudia Copeland. 
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such as traditional navigable waters and adjacent wetlands. Jurisdiction over others, such as non-
navigable tributaries that do not typically flow year-round and wetlands adjacent to such 
tributaries, will be determined on a case-by-case basis, to determine if the waters in question have 
a significant nexus with a traditional navigable water. The guidance details how the agencies 
should evaluate whether there is a significant nexus. The guidance is not intended to increase or 
decrease CWA jurisdiction, and it does not supersede or nullify the 2003 guidance, discussed 
above, which addressed jurisdiction over isolated wetlands in light of SWANCC. 
In accompanying documents, EPA and the Corps said that the Administration was considering a 
rulemaking in response to the Rapanos decision, but they noted that developing new rules to 
interpret the decision would take more time than issuing the guidance. They also noted that, 
despite issuance of the guidance documents, legal challenges to the scope of CWA jurisdiction are 
likely to continue. The guidance took effect immediately, but the agencies also solicited public 
comments, and left open the possibility of further changes in the future. 
Based on more than 66,000 public comments received and 18 months of implementation of the 
2007 guidance, EPA and the Corps issued revised guidance December 2, 2008.16 The revisions 
made few changes to the earlier document, but did add clarification of some key terms that are 
important to determining CWA jurisdiction, such as the meaning of the regulatory term “adjacent 
wetlands.” The agencies continue to take the position that, based on additional experience, they 
could provide additional guidance or initiate rulemaking. Some environmental groups criticized 
the revised guidance, saying that it continues to substantially limit the scope of waters that are 
protected by the CWA. Industry analysts said that the few changes in the guidance could make it 
simpler for regulators to make jurisdictional determinations. 
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In September 2002, a House Government Reform subcommittee held a hearing on the 
government’s response to the SWANCC decision. Committee Members and public witnesses 
indicated that a lack of guidance from the government clarifying its interpretation of the case had 
led to inconsistent regulatory decisions by Corps officials in individual regions of the country, and 
subsequent judicial decisions by other federal and state courts have been mixed. At the hearing, 
Corps and EPA officials testified on their efforts to develop guidance, which subsequently was 
released in January 2003. Concern about lingering confusion over the SWANCC decision and 
Corps implementation was the topic of an oversight hearing by the Senate Environment and 
Public Works Committee in June 2003. Developers and others in the regulated community 
criticized the Corps and EPA, saying that the January 2003 guidance document had not clarified 
the reach of federal jurisdiction. A House Transportation and Infrastructure subcommittee also 
held a hearing on post-SWANCC issues in March 2004. 
Legislation to overturn the SWANCC and Rapanos decisions by providing a broad definition of 
“waters of the United States” was introduced in the 110th Congress (H.R. 2421 and S. 1870, the 
Clean Water Authority Restoration Act of 2007). Similar legislation was introduced in the 107th, 
108th, and 109th Congresses. Other legislation to narrow the definition of “waters of the United 
States” also was introduced in the 109th Congress (H.R. 2658). On August 1, 2006, a Senate 
Environment and Public Works subcommittee held a hearing on the Court’s Rapanos decision. 
                                                 
16 The 2008 revised guidance and related documents, including the 2007 guidance, are available at 
http://www.epa.gov/owow/wetlands/guidance/CWAwaters.html. 
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For now, it is unclear whether the decision in the Rapanos case will accelerate congressional 
action on legislative proposals to address uncertainties about federal jurisdiction over wetlands 
and other waters, but both the SWANCC and Rapanos rulings remain highly controversial. 
The House Transportation and Infrastructure Committee held hearings on H.R. 2421 and related 
jurisdictional issues on July 17 and July 19, 2007. Another hearing was held April 16, 2008. The 
Senate Environment and Public Works Committee held a hearing on issues related to the Rapanos 
ruling on December 13, 2007, and held a legislative hearing on S. 1870 on April 9, 2008. 
Proponents contend that Congress must clarify the important issues left unsettled by the Supreme 
Court’s 2001 and 2006 rulings and by the 2007 Corps/EPA guidance. Bill sponsors argue that the 
legislation would “reaffirm” what Congress intended when the CWA was enacted in 1972 and 
what EPA and the Corps have subsequently been practicing until recently, in terms of CWA 
jurisdiction. But critics question the constitutionality of the legislation and assert that it would 
expand federal authority, thus likely increasing confusion, rather than settling it. Prospects for the 
legislation are uncertain, given the divided views on how it might be interpreted by federal 
agencies and the courts. 
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Several other issues affecting efforts to achieve the goals and objectives of the Clean Water Act 
also could be of interest during the 111th Congress through oversight and legislation. 
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In 2000 Congress enacted the Beaches Environmental Assessment and Coastal Health Act (the 
BEACH Act) in order to augment federal and state efforts to prevent human exposure to polluted 
coastal recreation waters, including the Great Lakes. This act directed coastal states to adopt 
updated water quality standards and EPA to develop new protective criteria and standards. It also 
authorized grants to coastal states to support monitoring and notification programs. In May 2007 
the GAO issued a report on federal and state implementation, finding that EPA has implemented 
most provisions of the act, but has not yet published new or revised water quality criteria, which 
the law required by 2005.17 
In the 110th Congress, Senate and House committees held hearings on the status of 
implementation of the BEACH Act, and bills to extend authorization for appropriations for the 
act’s grants were introduced. The House approved one such bill (H.R. 2537). It would have would 
allowed states to use BEACH Act funds to track sources of pollution and would require states to 
use rapid testing methods of beach water, in order to improve public notification. It proposed to 
increase grant funds to the states from $30 million annually to $40 million. It also would have 
directed EPA to publish revised water quality criteria for pathogens, a key pollutant of concern at 
beaches, as well as a list of all pathogens and pathogen indicators it has studied and observed in 
the course of developing those criteria. The Senate Environment and Public Works Committee 
approved companion legislation (S. 2844), but no further action occurred. 
                                                 
17 U.S. Government Accountability Office, EPA and States Have Made Progress in Implementing the BEACH Act, but 
Additional Actions Could Improve Public Health Protection, GAO-07-591, May 2007. 
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About 750 U.S. communities have combined sewers where domestic sanitary sewage, industrial 
wastes, infiltration from groundwater, and stormwater runoff are collected. These systems serve 
approximately 40 million persons, mainly in older urban and coastal cities. Normally (under dry-
weather conditions), the combined wastes are conveyed to a municipal sewage treatment plant. 
Properly designed, sized, and maintained combined sewers can be an acceptable part of a city’s 
water pollution control infrastructure. However, combined sewer overflow (CSO) occurs when 
the capacity of the collection and treatment system is exceeded due to high volumes of rainwater 
or snowmelt, and the excess volume is diverted and discharged directly into receiving waters, 
bypassing the sewage treatment plants. Often the excess flow that contains raw sewage, industrial 
wastes, and stormwater is discharged untreated. Many combined sewer systems are found in 
coastal areas where recreational areas, fish habitat and shellfish beds may be contaminated by the 
discharges. To manage CSOs, cities are subject to a policy issued by EPA in 1994 that requires 
implementation of nine minimum controls that generally are based on combinations of 
management techniques (such as temporary retention of excess flow during storm events) and 
structural measures (such as construction of separate storm sewer systems). 
One issue concerning some cities is the problem of overflows from municipal separate sanitary 
sewers (SSOs) that are not CSOs because they transport only sanitary wastes. Discharges of 
untreated sewage from these sewers can occur from manholes, broken pipes and deteriorated 
infrastructure, and undersized pipes, and can occur in wet or dry weather. EPA estimates that 
there are about 18,000 municipalities with separate sanitary sewers, all of which can, under 
certain circumstances, experience overflows. No explicit EPA or statutory control policy for 
addressing SSOs currently exists. 
Funding for CSO and SSO projects is a major concern of states and cities. The most recent clean 
water needs survey found that the largest needs category, totaling $55 billion and representing 
27% of total water infrastructure needs, is to address CSOs. In 2000, Congress passed legislation, 
the Wet Weather Water Quality Act, authorizing a two-year $1.5 billion grants program to reduce 
wet weather flows from municipal sewer systems, both CSOs and SSOs (Section 112 of Division 
B, P.L. 106-154). However, Congress provided no appropriations for these wet weather grants 
during the two years of authorization (FY2002-FY2003). As described above, in March 2007, the 
House passed legislation to reauthorize this grant program (H.R. 569). 
The 110th Congress also addressed a related issue, that of notification to the public when a sewer 
overflow event occurs. The House passed H.R. 2452, a bill intended to ensure that sewage 
treatment plants monitor for and report discharges of raw sewage from combined or separate 
sewers. The bill would have required EPA to issue criteria to guide plant operators in assessing 
whether a sewer overflow has the potential to affect human health or imminently and 
substantially endanger human health. The Senate Environment and Public Works Committee 
approved S. 2080 with an amendment providing the text of House-passed H.R. 2452, but no 
further action occurred. 
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Prior to the 1987 CWA amendments, the act’s requirements focused primarily on controlling 
pollution from “point” sources, that is, discharges from wastewater treatment plants and industrial 
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facilities. Yet, as industrial and municipal sources have abated pollution, uncontrolled nonpoint 
sources have become a relatively larger portion of remaining water quality problems—perhaps 
contributing as much as 50% of the nation’s water pollution. Nonpoint pollution is rainfall or 
snowmelt runoff from farm and urban areas, as well as construction, forestry, and mining sites. In 
1987 Congress added a new Section 319 to the act to strengthen the law regarding this major 
contributor to water pollution by requiring states to develop and implement programs to control 
nonpoint sources of pollution. States were required to identify waters not expected to meet water 
quality standards because of nonpoint source pollution and to implement plans for managing 
pollution from runoff. Federal grants totaling $400 million were authorized over four years to 
cover as much as 60% of the costs of implementing a state’s management plan. (In recent years, 
actual appropriations for Section 319 grants have averaged about $205 million annually.) 
At issue today is what progress is being made to manage nonpoint source pollution and what 
additional efforts may be needed involving Section 319 or other public and private activities. 
Several concerns have been raised about the program, such as whether state plans have 
comprehensively addressed their nonpoint pollution problems. Some observers are critical of the 
largely voluntary nature of the Section 319 program, consisting of “all carrot but no stick,” while 
others argue that the types of individual land management decisions that are needed to address 
nonpoint source pollution cannot be regulated in the same ways that industrial sources are 
controlled (i.e., through discharge limitations and permits). 
Funding has become an important issue as states moved from assessment and plan development 
to management, since Congress intended that Section 319 funds be used primarily to implement 
nonpoint pollution controls on the ground. Precise estimates of management costs are not 
available, because so much depends on the site-specific nature of problems and solutions. 
Without adequate funding to implement state management plans, it is doubtful that much will be 
achieved under Section 319 to control nonpoint source pollution. 
Because agricultural activities are known to be a significant source of nonpoint pollution 
nationwide, the adequacy of efforts to address these sources has received much attention. 
Questions have been raised about the 319 grant program’s efficacy and overlap with farm bill 
conservation funding.18 In particular, the White House Office of Management and Budget (OMB) 
found that EPA had not demonstrated results under the program and has urged the agency to shift 
its focus away from implementing projects in agricultural areas, regardless of water quality status, 
and toward implementing projects specifically in waters that have been identified as impaired (are 
failing to meet established water quality standards). State officials have been concerned that 
OMB is not fully aware of the extent to which Section 319 funds address a range of nonpoint 
pollution control needs beyond the agricultural sector. 
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As noted above, EPA’s water quality reports identify agricultural activities as the leading 
contributor to water quality impairments nationwide. Animal feeding operations (AFOs) are only 
a subset of the agriculture category, but because more than one-half of the states specifically 
identify AFOs as contributing to impairments, public and policy attention has increased on how to 
minimize public health and environmental impacts of runoff from them. AFOs are agricultural 
                                                 
18 For information, see CRS Report RL34557, Conservation Provisions of the 2008 Farm Bill, by Tadlock Cowan and 
Renee Johnson. 
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facilities that confine livestock and their feeding activities, thus concentrating animal populations 
and waste. Animal waste is frequently applied to land for disposal and to use the nutrient value of 
manure to benefit crops. If not managed properly, however, it can pose risks to water quality and 
public health, contributing pollutants such as nutrients, sediment, pathogens, and ammonia to the 
environment. 
Clean water regulations issued in the 1970s required discharge permits for the largest AFOs, 
termed confined animal feeding operations (CAFOs). However, EPA acknowledged that 
compliance and enforcement of these permit rules was poor (less than one-third of covered 
facilities actually have permits) and that the regulations themselves were outdated. In 2003, EPA 
issued a revised rule to regulate waste discharges from CAFOs. Among the key elements, the 
rules include requirements for development of nutrient management plans to better manage land 
application of manure. Farm groups generally supported the regulation as being consistent with 
environmental initiatives in the 2002 farm bill (P.L. 107-171), but environmental groups criticized 
the rule for inadequately addressing animal waste runoff problems.19 A January 2003 GAO report 
concluded that the rules will be ineffective unless EPA increases its oversight of state regulatory 
programs, which have primary responsibility for ensuring compliance by feedlot operators.20 
In February 2005, a federal court issued a ruling in a set of challenges to the CAFO rule 
(Waterkeeper Alliance, American Farm Bureau, et al. v. EPA, 399 F.3d 486 (2d Cir. 2005)). The 
litigation involved challenges to the permitting scheme of the rule, the type of discharges subject 
to regulation, and the effluent limitations established in the rules. The court upheld major parts of 
the EPA rule, held in favor of some of industry’s challenges, held in favor of several of 
environmentalists’ challenges, and in some cases directed EPA to explain more fully why it did or 
did not do certain things with regard to specific provisions of the rule. In October 2008, EPA 
issued final revisions to the 2003 CAFO rule in response to the court’s decision.21 
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Also of legislative interest are the impacts of court rulings in several cases concerning 
implementation of existing provisions of the law and involving questions of whether certain 
activities require a Clean Water Act discharge permit. A fundamental element of the act is the 
requirement that the “discharge of a pollutant” from a point source shall be carried out pursuant to 
a permit authorized by the National Pollutant Discharge Elimination System (NPDES) program 
under Section 402 of the law. 
In 2004, the Supreme Court held that the transfer of polluted water from one waterbody to 
another may require a permit, notwithstanding that no new pollutant is added in the process of 
transfer (South Florida Water Management District v. Miccosukee Tribe of Indians, 124 S. Ct. 
1537 (2004)). The decision raised concerns in agricultural areas where such transfers often occur 
in supplying irrigation water, presently without a permit. Congress has not held oversight 
hearings on impacts of the Court’s decision, and legislation that might address the ruling has not 
                                                 
19 For additional information, see CRS Report RL31851, Animal Waste and Water Quality: EPA Regulation of 
Concentrated Animal Feeding Operations (CAFOs), by Claudia Copeland. 
20  U.S. General Accounting Office, Increased EPA Oversight Will Improve Environmental Programs for Concentrated 
Animal Feeding Operations, GAO-03-285, January 2003. 
21 For additional information, see CRS Report RL33656, Animal Waste and Water Quality: EPA’s Response to the 
Waterkeeper Alliance Court Decision on Regulation of CAFOs, by Claudia Copeland. 
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been introduced. In response to the Court’s ruling, in June 2008, EPA promulgated a rule defining 
categories or types of water transfers that the agency believes do not require NPDES permits. The 
rule, which supports EPA’s long-standing legal interpretation of the CWA, is controversial and 
was quickly challenged in federal courts by the Miccosukee Indian Tribe of Florida and 
environmental advocates. A ruling in that litigation has not been issued. 
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Clean water issues also are addressed by Congress in the context of appropriations.22 
The President’s FY2009 budget was presented on February 5, 2008. Overall, the budget sought 
$7.1 billion for EPA programs and activities, 5% less than Congress appropriated for FY2008. 
The request included a number of reductions for water quality programs. It sought $555 million 
for the clean water SRF program (20% below the FY2008 level) and, as in previous budgets, 
requested no funding for congressionally earmarked water infrastructure grants. In addition, the 
budget asked for 8% less for nonpoint pollution management grants ($184.5 million, compared 
with $200.8 million in FY2008) and sought no funding for the targeted watershed grants program, 
a competitive grant program that provides funding for community-driven watershed restoration 
projects; it received $10 million in FY2008 appropriations. 
In June 2008, a House Appropriations subcommittee approved a bill with FY2009 funds for EPA. 
The bill included $850 million for clean water SRF capitalization grants ($295 million above the 
Administration’s request and $161 million above the FY2008 level) and $150 million for 
congressionally earmarked water infrastructure grants. 
No further action occurred before the start of the new fiscal year. However, at the end of 
September Congress and the President agreed to legislation providing partial-year funding for 
EPA and most other agencies and departments. This bill, the Consolidated Security, Disaster 
Assistance, and Continuing Resolution Act, 2009 (P.L. 110-329) provides funding through March 
6, 2009, at FY2008-enacted levels (i.e., $689 million for clean water SRF grants). Final action on 
FY2009 appropriations is expected to occur early in 2009. 
 
ȱȱȱ
 
Claudia Copeland 
   
Specialist in Resources and Environmental Policy 
ccopeland@crs.loc.gov, 7-7227 
 
 
 
 
                                                 
22 For additional information, see CRS Report 96-647, Water Infrastructure Financing: History of EPA Appropriations, 
by Claudia Copeland. 
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