Order Code RS22978
October 27, 2008
Federal Research and Development Funding:
Possible Impacts of Operating under a
Continuing Resolution
Dana A. Shea, Specialist in Science and Technology Policy
Daniel Morgan, Analyst in Science and Technology Policy
Resources, Science and Industry Division
Summary
On September 30, 2008, President Bush signed into law the Consolidated Security,
Disaster Assistance, and Continuing Appropriations Act, 2009 (P.L. 110-329). Division
A of this law is a continuing resolution and provides funding (through March 6, 2009,
unless superseded by further congressional action) for agencies and programs normally
funded by nine of the 12 regular appropriations bills. The same law also includes the
other three FY2009 appropriations acts: one funding the Department of Defense
(Division C of P.L. 110-329), one funding the Department of Homeland Security
(Division D of P.L. 110-329), and one funding military construction, the Department of
Veterans Affairs, and related agencies (Division E of P.L. 110-329). The continuing
resolution funds most other agencies and programs at FY2008 pre-supplemental levels.
The continuing resolution generally prohibits agencies from beginning or resuming
programs that did not receive appropriations in FY2008. Thus new civilian research and
development programs and funding increases for existing activities will be delayed until
further appropriations bills have passed. For many research and development programs,
FY2008 funding was provided under the Consolidated Appropriations Act, 2008 (P.L.
110-161), which largely extended FY2007 funding levels. FY2007 funding was
provided under a continuing resolution (P.L. 110-5) based on FY2006 appropriations.
Therefore, some programs are operating in FY2009 with budgets similar to those of
FY2006.
Federal funding for research and development (R&D) is generally supported by both
Congress and the Administration, though programmatic priorities often differ.1 The Bush
Administration states that it has requested $147 billion in federal R&D funding for
FY2009, approximately 2.7% more than the estimated FY2008 appropriation of $143
1 In the context of this report, research and development funding includes funding for research
and development facilities.

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billion.2 The bulk of the proposed increase would come from continuing the American
Competitiveness Initiative (ACI) and treating the new availability of previously
appropriated funds for purchasing biodefense countermeasures through Project BioShield
as research and development funding.3
The President proposed the ACI in response to growing concerns about America’s
ability to compete technologically in the global marketplace. As part of the ACI, the
President called for doubling, over 10 years, the aggregate funding of the National Science
Foundation (NSF), the Department of Energy (DOE) Office of Science, and the core
programs of the National Institute of Standards and Technology (NIST). The main focus
of the increases would be to support basic research in the physical sciences and
engineering. The FY2009 request would increase R&D funding for NSF by $701 million,
for the DOE Office of Science by $749 million, and for NIST core programs by $33
million relative to FY2008 appropriated levels.4
The President’s request shifts the funding balance between research and
development. Despite the President’s continued support for the ACI, total funding for
basic and applied research would decrease by 0.3% in 2009 compared to 2008. While
some specific agency basic and applied research budgets would increase, these increases
are more than offset by decreases at other agencies. In contrast, funds for development
would increase by 1.9%. This increase in support for development more than offsets the
decrease in support for research, thus total R&D funding would increase under the
President’s proposal.
The Current Status of FY2009 R&D Appropriations
The 110th Congress has passed three appropriations acts, the Department of Defense
Appropriations Act, 2009 (Division C of P.L. 110-329), the Department of Homeland
Security Appropriations Act, 2009 (Division D of P.L. 110-329), and the Military
Construction and Veterans Affairs Appropriations Act, 2008 (Division E of P.L. 110-
329). Since the beginning of FY2009 on October 1, 2008, funding for all other agencies
and programs has been provided through a continuing resolution (Division A of P.L.
110-329). The continuing resolution maintains current funding levels through March 6,
2009, or until superseded by subsequent appropriations law, for the agencies covered
under the nine regular appropriations bills still outstanding.
2 Office of Management and Budget, The White House, Analytical Perspectives, Budget of the
United States Government, Fiscal Year 2009 (Government Printing Office: Washington, DC),
2008, pp. 45-55. Different sources give somewhat different figures for federal R&D
expenditures, largely because of methodological differences in identifying which programs and
activities are considered to be R&D. For example, the totals cited in Analytical Perspectives are
not precisely comparable with those in Table 1 of this report.
3 For more information on the American Competitiveness Initiative and related efforts, see CRS
Report RL34396, The America COMPETES Act and the FY2009 Budget, by Deborah D. Stine.
For more information on Project BioShield, see CRS Report RS21507, Project BioShield:
Purposes and Authorities, by Frank Gottron.
4 When calculating funding for the ACI, the White House includes the entire budget of NSF, not
just R&D funds. The entire FY2009 budget of NSF is increased by $821 million over the F2008
budget.

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For all agencies that have not had an appropriations bill for FY2009 signed into law,
the continuing resolution provides funding at the same level they received in FY2008.
Funds are provided on a prorated basis for the duration of the continuing resolution. The
continuing resolution also generally prohibits agencies from using these funds to “initiate
or resume any project or activity for which appropriations, funds, or other authority were
not available during fiscal year 2008.”5 The current status of FY2009 funding for R&D
is summarized by agency in Table 1.
The three major crosscutting multiagency R&D initiatives are all funded largely by
agencies operating under the continuing resolution:
! The FY2009 request for the National Nanotechnology Initiative (NII) is
$1.532 billion, a 2% increase from $1.497 billion in FY2008.
Approximately 72% of this request is at agencies operating under the
continuing resolution.
! The FY2009 request for the Networking and Information Technology
R&D (NITRD) program is $3.566 billion, a 6% increase from $3.372
billion in FY2008. Approximately 65% of this request is at agencies
operating under the continuing resolution.
! The FY2009 request for the Climate Change Science Program (CCSP)
is $2.105 billion, a 10% increase from $1.838 billion in FY2008. More
than 99% of this request is at agencies operating under the continuing
resolution.6
Issues for Congress
If the federal government continues to operate under a continuing resolution, most
existing nondefense R&D programs would continue to receive funding at the FY2008
level. To some extent, this funding mechanism is likely to cause federal agencies to
continue to support existing R&D priorities, rather than shifting to new ones, since only
existing programs retain funding. In addition, because of inflation, even funds provided
at the FY2008 level represent a reduction in actual purchasing power.7 For R&D
programs in some agencies, FY2008 funding is close to the level appropriated in FY2006.
For these programs, the loss of purchasing power and the difficulty of adjusting policy
goals and priorities may be especially challenging.
5 P.L. 110-329, Sec. 104.
6 Office of Management and Budget, The White House, Analytical Perspectives, Budget of the
United States Government, Fiscal Year 2009 (Government Printing Office: Washington, DC),
2008, Table 5-3. For more information on these three initiatives, see CRS Report RL34401, The
National Nanotechnology Initiative: Overview, Reauthorization, and Appropriations Issues, by
John F. Sargent; CRS Report RL33586, The Federal Networking and Information Technology
Research and Development Program: Funding Issues and Activities, by Patricia Moloney
Figliola; and CRS Report RL33817, Climate Change: Federal Funding and Tax Incentives, by
Jane A. Leggett.
7 For example, P.L. 110-329 contains a provision (Sec. 142) mandating a 3.9% increase in civil
service employee pay rates.

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Most new nondefense R&D programs planned for FY2009 would not be allowed to
start. Even once regular appropriations for FY2009 become law, allowing new programs
to begin, agencies may have difficulty meeting their projected R&D milestones and goals
because of the shortened time frame for obligating funds for these programs. Expected
completion times for research programs may need to be revised and new research
performers identified. Also, agency plans for purchase of major instruments and other
capital equipment may be delayed or prevented under the continuing resolutions. For new
R&D programs, milestones planned to occur in the first half of FY2009 are unlikely to
be met, since, if the continuing resolution extends through March 6, 2009, the first half
of the fiscal year will be almost completed. Another issue for new programs is whether
agencies will be able to obligate whatever new appropriations they receive. Most agency
appropriations for R&D expire at the end of the fiscal year for which they are
appropriated. Because most new programs cannot be started under a continuing
resolution, even if appropriations for them are eventually received, agencies will have less
time than the full fiscal year to establish these programs and obligate the funds for them.

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Table 1. Estimated Federal R&D Appropriations for FY2009
($ in millions)
FY2008
FY2009
FY2009 FY2009
FY2009
Department/Agency
Estimate
Request
House
Senate
Appropriation
Department of Energy
9,903
10,535
10,903
11,010
—
Department of Defensea
76,905
79,616
—
—
80,302
National Aeronautics and
12,212
12,857
12,967
13,044
—
Space Administration
National Institutes of
29,321
29,165
30,316
30,191
—
Health
National Science
6,032
6,854
6,854
6,854
—
Foundation
Department of
2,591
2,280
—
2,543
—
Agriculture
Department of Homeland
1,340
1,449
1,447
1,476
1,465
Securityb
National Institute of
756
636
817
814
—
Standards and
Technology
National Oceanic and
581
577
—
633
—
Atmospheric
Administration
Department of
823
901
—
912
—
Transportation
Department of the
671
628
—
—
—
Interior
Environmental Protection
713
726
—
—
—
Agency
Source: Compiled by CRS from various sources. For details, see CRS Report RL34448, Federal Research
and Development Funding: FY2009, coordinated by John F. Sargent.
Note: Agencies for which no FY2009 appropriations act has been signed into law are funded under the
continuing resolution (P.L. 110-329) at FY2008 levels.
a. This line consists of Title IV funding in the Department of Defense appropriations act and does not
include research, development, testing, and evaluation funds associated with the Defense Health
Program, the Chemical Agents and Munitions Destruction Program, and the Mine Resistant Ambush
Protected Vehicle program. It also does not include R&D funds from supplemental or additional
appropriations acts.
b. This line does not include the $2.175 billion newly available from prior appropriations for Project
BioShield.

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